Fixing bug

.gitlab-ci.yml

@@ -8,6 +8,7 @@ before_script:
 
 test:
   script:
-    - bash test/test_workflow_local.sh
-    - bash test/test_dag.sh
-    - bash test/test_rule_graph.sh
+    - cd test
+    - bash test_workflow_local.sh
+    - bash test_dag.sh
+    - bash test_rule_graph.sh

test/test_workflow_local.sh

@@ -24,7 +24,7 @@ snakemake \
 --printshellcmds \
 --snakefile="../snakemake/Snakefile" \
 --use-singularity \
---singularity-args "--no-home --bind ${PWD},/scicore/home/zavolan/devagy74/projects" \
+--singularity-args "--no-home --bind ${PWD},${PWD}/../images" \
 --cores=4 \
 --rerun-incomplete \
 --configfile config.yaml \