Skip to content

GitLab

Explore

Sign in

Primary navigation

Project

M

mirflowz
- Activity
- Members
- Labels
- Issues
- Issue boards
- Milestones
- Wiki
- Environments
- Incidents

Snippets Groups Projects

This is an archived project. Repository and other project resources are read-only.

b0c39e14

Commit b0c39e14 authored 2 years ago by Iris Mestres Pascual Committed by Alex Kanitz 2 years ago

Downloads
- Patches
- Plain Diff

refactor: read samples from table

parent 78fc6434

No related branches found

No related tags found

1 merge request!22refactor: read samples from table

Changes 12

Hide whitespace changes

Inline Side-by-side

Showing

RUNS/JOB/cluster.json 68 additions, 0 deletions

RUNS/JOB/cluster.json
RUNS/JOB/input_files/samples_table.csv 2 additions, 0 deletions

RUNS/JOB/input_files/samples_table.csv
RUNS/JOB/run_workflow_local.sh 33 additions, 0 deletions

RUNS/JOB/run_workflow_local.sh
RUNS/JOB/run_workflow_slurm.sh 49 additions, 0 deletions

RUNS/JOB/run_workflow_slurm.sh
config/config.yaml 91 additions, 0 deletions

config/config.yaml
config/config_template.yaml 98 additions, 0 deletions

config/config_template.yaml
test/config.yaml 10 additions, 18 deletions

test/config.yaml
test/test_files/samples_table.csv 2 additions, 0 deletions

test/test_files/samples_table.csv
workflow/Snakefile 11 additions, 3 deletions

workflow/Snakefile
workflow/rules/map.smk 58 additions, 13 deletions

workflow/rules/map.smk
workflow/rules/prepare.smk 7 additions, 5 deletions

workflow/rules/prepare.smk
workflow/rules/quantify.smk 21 additions, 3 deletions

workflow/rules/quantify.smk

with 450 additions and 42 deletions

Loading

0% Loading or .

You are about to add 0 people to the discussion. Proceed with caution.

Finish editing this message first!

Please register or sign in to comment