Update .gitlab-ci.yml

.gitlab-ci.yml

@@ -29,3 +29,14 @@ test_1:
   script:
     - python -m pytest
 
+test_trascritps:
+  stage: transcipts
+
+  before_script:
+    -java -version
+    -apt-get install bedtools
+    -curl -s https://get.nextflow.io | bash && chmod +x nextflow 
+    -echo 'export PATH=$PATH:'$(pwd) >> ~/.bashrc && source ~/.bashrc
+  
+  script:
+    -nextflow /src/generate_transcripts.nf