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Commit ce67ac87 authored by Kathleen Moriarty's avatar Kathleen Moriarty
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fix mypy problems

parent 0b2cb762
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1 merge request!17Issue 7
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Stage: qc
Stage: test
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src/read_sequencing/cli.py
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"""Command Line Interface.""" """Command Line Interface."""
import argparse import argparse
from read_sequencing import read_sequencing from src.read_sequencing import read_sequencing
def parse_args() -> argparse.Namespace: def parse_args() -> argparse.Namespace:
...@@ -39,7 +39,7 @@ def main() -> None: ...@@ -39,7 +39,7 @@ def main() -> None:
Runs the functions read_sequencing. Runs the functions read_sequencing.
""" """
args = parse_args() args = parse_args()
read_sequencing(frag_file_name=args.frag_file_name, read_sequencing.read_sequencing(frag_file_name=args.frag_file_name,
output_file_name=args.output_file_name, output_file_name=args.output_file_name,
num_reads=args.num_reads, num_reads=args.num_reads,
read_len=args.read_len) read_len=args.read_len)
......
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