Commits · issue_7 · zavolan_group / pipelines / scRNA-seq-simulation

Jan 03, 2022
- add test for cli - but needs to be improved · 89da273b
  Kathleen Moriarty authored 3 years ago
  
  89da273b
- fix reference to package · 31915d91
  Kathleen Moriarty authored 3 years ago
  
  31915d91
- remove old read_sequencing.py · 59e66531
  Kathleen Moriarty authored 3 years ago
  
  59e66531
- fix flake8 problem · 301e9f23
  Kathleen Moriarty authored 3 years ago
  
  301e9f23
- fix mypy problems · ce67ac87
  Kathleen Moriarty authored 3 years ago
  
  ce67ac87
- fix flake8 problems · 0b2cb762
  Kathleen Moriarty authored 3 years ago
  
  0b2cb762
- Merge branch 'issue_7' of... · d715c366
  Kathleen Moriarty authored 3 years ago
  
  Merge branch 'issue_7' of ssh://git.scicore.unibas.ch:2222/zavolan_group/pipelines/scrna-seq-simulation into issue_7
  d715c366
- add subpackage with cli · 3e933d2d
  Kathleen Moriarty authored 3 years ago
  
  3e933d2d
- replace readline() to use file handle as iterator · 958f7e41
  Kathleen Moriarty authored 3 years ago
  
  958f7e41
- alphatbetize packages · 68d3e622
  Kathleen Moriarty authored 3 years ago
  
  68d3e622
- removed author name · e56d65c5
  Kathleen Moriarty authored 3 years ago
  
  e56d65c5
Dec 08, 2021
- added: test for length of read · 66c502ef
  Kathleen Moriarty authored 3 years ago and Kathleen Moriarty committed 3 years ago
  
  66c502ef
- fixed: bug in line 85 · cb8f3d19
  Kathleen Moriarty authored 3 years ago and Kathleen Moriarty committed 3 years ago
  
  cb8f3d19
- added: comments and new lines · d3ccefa8
  Kathleen Moriarty authored 3 years ago and Kathleen Moriarty committed 3 years ago
  
  d3ccefa8
- fix: python good practices · bf34cd97
  Kathleen Moriarty authored 3 years ago and Kathleen Moriarty committed 3 years ago
  
  bf34cd97
- add: description line for reads · 1bed9aa4
  Kathleen Moriarty authored 3 years ago and Kathleen Moriarty committed 3 years ago
  
  1bed9aa4
- change: read start random to read start at 0 · 5d15d53f
  Kathleen Moriarty authored 3 years ago and Kathleen Moriarty committed 3 years ago
  
  5d15d53f
- remove: num_seq_cyc parameter · e1993339
  Kathleen Moriarty authored 3 years ago and Kathleen Moriarty committed 3 years ago
  
  e1993339
- added type annotation · 685f8b62
  Kathleen Moriarty authored 3 years ago and Kathleen Moriarty committed 3 years ago
  
  685f8b62
- fix docstring text · 7bff934e
  Kathleen Moriarty authored 3 years ago and Kathleen Moriarty committed 3 years ago
  
  7bff934e
- $U-STI\morika's avatar$
  
  fixed ranges to correct # of reads · 76344eb6
  U-STI\morika authored 3 years ago and Kathleen Moriarty committed 3 years ago
  
  76344eb6
- $U-STI\morika's avatar$
  
  test input for issue 7 · 57740e81
  U-STI\morika authored 3 years ago and Kathleen Moriarty committed 3 years ago
  
  57740e81
- $U-STI\morika's avatar$
  
  test for issue 7 · 8c9a14f2
  U-STI\morika authored 3 years ago and Kathleen Moriarty committed 3 years ago
  
  8c9a14f2
- $U-STI\morika's avatar$
  
  first version of read_sequencing · e3aeefd5
  U-STI\morika authored 3 years ago and Kathleen Moriarty committed 3 years ago
  
  e3aeefd5
- added: test for length of read · 36474d3f
  Kathleen Moriarty authored 3 years ago
  
  36474d3f
- fixed: bug in line 85 · e129ca78
  Kathleen Moriarty authored 3 years ago
  
  e129ca78
- added: comments and new lines · eea24234
  Kathleen Moriarty authored 3 years ago
  
  eea24234
- fix: python good practices · 7549c162
  Kathleen Moriarty authored 3 years ago
  
  7549c162
- add: description line for reads · 12ef1d8e
  Kathleen Moriarty authored 3 years ago
  
  12ef1d8e
- change: read start random to read start at 0 · b9d94593
  Kathleen Moriarty authored 3 years ago
  
  b9d94593
Dec 07, 2021
- remove: num_seq_cyc parameter · e80482a7
  Kathleen Moriarty authored 3 years ago
  
  e80482a7
- feat: add parameter class · 557be05b
  Michele Garioni authored 3 years ago and Alex Kanitz committed 3 years ago
  
  557be05b
Dec 03, 2021
- added type annotation · 8ce34674
  Kathleen Moriarty authored 3 years ago
  
  8ce34674
- fix docstring text · 11896ade
  Kathleen Moriarty authored 3 years ago
  
  11896ade
Nov 29, 2021
- $U-STI\morika's avatar$
  
  fixed ranges to correct # of reads · b2f1355c
  U-STI\morika authored 3 years ago
  
  b2f1355c
- $U-STI\morika's avatar$
  
  test input for issue 7 · fec9404e
  U-STI\morika authored 3 years ago
  
  fec9404e
- $U-STI\morika's avatar$
  
  test for issue 7 · daf47084
  U-STI\morika authored 3 years ago
  
  daf47084
- $U-STI\morika's avatar$
  
  first version of read_sequencing · 03848a89
  U-STI\morika authored 3 years ago
  
  03848a89
Nov 24, 2021
- test: add mock data for ML task · 95d07fbd
  MihaelaZavolan authored 3 years ago and Alex Kanitz committed 3 years ago
  
  95d07fbd
Nov 17, 2021
- feat: function to generate poly(A) tail sequence · 444cc961
  MihaelaZavolan authored 3 years ago and Alex Kanitz committed 3 years ago
  
  444cc961