Newer
Older
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
"http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
<!-- Generated by graphviz version 2.38.0 (20140413.2041)
-->
<!-- Title: snakemake_dag Pages: 1 -->
<svg width="2252pt" height="913pt"
viewBox="0.00 0.00 2252.45 913.00" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 909)">
<title>snakemake_dag</title>
<polygon fill="white" stroke="none" points="-4,4 -4,-909 2248.45,-909 2248.45,4 -4,4"/>
<g id="node1" class="node"><title>0</title>
<path fill="none" stroke="#56d85b" stroke-width="2" d="M1166,-36C1166,-36 1136,-36 1136,-36 1130,-36 1124,-30 1124,-24 1124,-24 1124,-12 1124,-12 1124,-6 1130,-0 1136,-0 1136,-0 1166,-0 1166,-0 1172,-0 1178,-6 1178,-12 1178,-12 1178,-24 1178,-24 1178,-30 1172,-36 1166,-36"/>
<text text-anchor="middle" x="1151" y="-15.5" font-family="sans" font-size="10.00">finish</text>
<g id="node2" class="node"><title>1</title>
<path fill="none" stroke="#d87556" stroke-width="2" d="M1185,-108C1185,-108 1117,-108 1117,-108 1111,-108 1105,-102 1105,-96 1105,-96 1105,-84 1105,-84 1105,-78 1111,-72 1117,-72 1117,-72 1185,-72 1185,-72 1191,-72 1197,-78 1197,-84 1197,-84 1197,-96 1197,-96 1197,-102 1191,-108 1185,-108"/>
<text text-anchor="middle" x="1151" y="-87.5" font-family="sans" font-size="10.00">MULTIQC_report</text>
<g id="edge1" class="edge"><title>1->0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1151,-71.6966C1151,-63.9827 1151,-54.7125 1151,-46.1124"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1154.5,-46.1043 1151,-36.1043 1147.5,-46.1044 1154.5,-46.1043"/>
<g id="node3" class="node"><title>2</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" d="M1200,-180C1200,-180 1102,-180 1102,-180 1096,-180 1090,-174 1090,-168 1090,-168 1090,-156 1090,-156 1090,-150 1096,-144 1102,-144 1102,-144 1200,-144 1200,-144 1206,-144 1212,-150 1212,-156 1212,-156 1212,-168 1212,-168 1212,-174 1206,-180 1200,-180"/>
<text text-anchor="middle" x="1151" y="-159.5" font-family="sans" font-size="10.00">prepare_MultiQC_config</text>
<g id="edge2" class="edge"><title>2->1</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1151,-143.697C1151,-135.983 1151,-126.712 1151,-118.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1154.5,-118.104 1151,-108.104 1147.5,-118.104 1154.5,-118.104"/>
<g id="node4" class="node"><title>3</title>
<path fill="none" stroke="#c6d856" stroke-width="2" d="M1198.5,-252C1198.5,-252 1103.5,-252 1103.5,-252 1097.5,-252 1091.5,-246 1091.5,-240 1091.5,-240 1091.5,-228 1091.5,-228 1091.5,-222 1097.5,-216 1103.5,-216 1103.5,-216 1198.5,-216 1198.5,-216 1204.5,-216 1210.5,-222 1210.5,-228 1210.5,-228 1210.5,-240 1210.5,-240 1210.5,-246 1204.5,-252 1198.5,-252"/>
<text text-anchor="middle" x="1151" y="-231.5" font-family="sans" font-size="10.00">prepare_files_for_report</text>
<g id="edge3" class="edge"><title>3->2</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1151,-215.697C1151,-207.983 1151,-198.712 1151,-190.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1154.5,-190.104 1151,-180.104 1147.5,-190.104 1154.5,-190.104"/>
<g id="node5" class="node"><title>4</title>
<path fill="none" stroke="#78d856" stroke-width="2" d="M280,-324C280,-324 12,-324 12,-324 6,-324 0,-318 0,-312 0,-312 0,-300 0,-300 0,-294 6,-288 12,-288 12,-288 280,-288 280,-288 286,-288 292,-294 292,-300 292,-300 292,-312 292,-312 292,-318 286,-324 280,-324"/>
<text text-anchor="middle" x="146" y="-309" font-family="sans" font-size="10.00">pe_fastqc</text>
<text text-anchor="middle" x="146" y="-298" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
<g id="edge4" class="edge"><title>4->3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M292.014,-288.792C295.035,-288.52 298.033,-288.255 301,-288 590.339,-263.126 936.045,-245.222 1081.31,-238.235"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1081.6,-241.725 1091.42,-237.751 1081.26,-234.733 1081.6,-241.725"/>
<g id="node6" class="node"><title>5</title>
<path fill="none" stroke="#61d856" stroke-width="2" d="M602,-324C602,-324 322,-324 322,-324 316,-324 310,-318 310,-312 310,-312 310,-300 310,-300 310,-294 316,-288 322,-288 322,-288 602,-288 602,-288 608,-288 614,-294 614,-300 614,-300 614,-312 614,-312 614,-318 608,-324 602,-324"/>
<text text-anchor="middle" x="462" y="-309" font-family="sans" font-size="10.00">fastqc</text>
<text text-anchor="middle" x="462" y="-298" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
<g id="edge5" class="edge"><title>5->3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M614.42,-289.384C618.998,-288.917 623.533,-288.455 628,-288 790.391,-271.457 981.161,-252.159 1081.39,-242.031"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1081.79,-245.508 1091.39,-241.02 1081.09,-238.543 1081.79,-245.508"/>
<g id="node7" class="node"><title>6</title>
<path fill="none" stroke="#56c1d8" stroke-width="2" d="M1393,-468C1393,-468 1251,-468 1251,-468 1245,-468 1239,-462 1239,-456 1239,-456 1239,-444 1239,-444 1239,-438 1245,-432 1251,-432 1251,-432 1393,-432 1393,-432 1399,-432 1405,-438 1405,-444 1405,-444 1405,-456 1405,-456 1405,-462 1399,-468 1393,-468"/>
<text text-anchor="middle" x="1322" y="-447.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
<g id="edge6" class="edge"><title>6->3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1328.46,-431.931C1339.29,-400.128 1356.95,-331.131 1325,-288 1301.2,-255.876 1258.39,-242.563 1221.19,-237.312"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1221.22,-233.789 1210.87,-236.035 1220.36,-240.736 1221.22,-233.789"/>
</g>
<!-- 7 -->
<g id="node8" class="node"><title>7</title>
<path fill="none" stroke="#d89556" stroke-width="2" d="M683,-468C683,-468 557,-468 557,-468 551,-468 545,-462 545,-456 545,-456 545,-444 545,-444 545,-438 551,-432 557,-432 557,-432 683,-432 683,-432 689,-432 695,-438 695,-444 695,-444 695,-456 695,-456 695,-462 689,-468 683,-468"/>
<text text-anchor="middle" x="620" y="-447.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
<g id="edge7" class="edge"><title>7->3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M618.625,-431.954C616.973,-398.6 618.624,-324.763 661,-288 692.11,-261.01 953.591,-244.639 1081.32,-238.181"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1081.59,-241.672 1091.4,-237.678 1081.24,-234.681 1081.59,-241.672"/>
</g>
<!-- 8 -->
<g id="node9" class="node"><title>8</title>
<path fill="none" stroke="#d86656" stroke-width="2" d="M1449.5,-396C1449.5,-396 1384.5,-396 1384.5,-396 1378.5,-396 1372.5,-390 1372.5,-384 1372.5,-384 1372.5,-372 1372.5,-372 1372.5,-366 1378.5,-360 1384.5,-360 1384.5,-360 1449.5,-360 1449.5,-360 1455.5,-360 1461.5,-366 1461.5,-372 1461.5,-372 1461.5,-384 1461.5,-384 1461.5,-390 1455.5,-396 1449.5,-396"/>
<text text-anchor="middle" x="1417" y="-375.5" font-family="sans" font-size="10.00">plot_TIN_scores</text>
<g id="edge8" class="edge"><title>8->3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1410.19,-359.799C1401.28,-339.516 1383.69,-306.261 1358,-288 1317.83,-259.444 1263.61,-246.253 1220.74,-240.17"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1221.03,-236.678 1210.66,-238.84 1220.11,-243.618 1221.03,-236.678"/>
</g>
<!-- 9 -->
<g id="node10" class="node"><title>9</title>
<path fill="none" stroke="#b6d856" stroke-width="2" d="M794,-324C794,-324 682,-324 682,-324 676,-324 670,-318 670,-312 670,-312 670,-300 670,-300 670,-294 676,-288 682,-288 682,-288 794,-288 794,-288 800,-288 806,-294 806,-300 806,-300 806,-312 806,-312 806,-318 800,-324 794,-324"/>
<text text-anchor="middle" x="738" y="-309" font-family="sans" font-size="10.00">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="738" y="-298" font-family="sans" font-size="10.00">salmon_merge_on: tpm</text>
<g id="edge9" class="edge"><title>9->3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M806.017,-289.934C809.389,-289.263 812.731,-288.614 816,-288 907.236,-270.855 1013.15,-254.726 1081.06,-244.865"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1081.82,-248.292 1091.21,-243.396 1080.82,-241.364 1081.82,-248.292"/>
</g>
<!-- 10 -->
<g id="node11" class="node"><title>10</title>
<path fill="none" stroke="#b6d856" stroke-width="2" d="M957.5,-324C957.5,-324 836.5,-324 836.5,-324 830.5,-324 824.5,-318 824.5,-312 824.5,-312 824.5,-300 824.5,-300 824.5,-294 830.5,-288 836.5,-288 836.5,-288 957.5,-288 957.5,-288 963.5,-288 969.5,-294 969.5,-300 969.5,-300 969.5,-312 969.5,-312 969.5,-318 963.5,-324 957.5,-324"/>
<text text-anchor="middle" x="897" y="-309" font-family="sans" font-size="10.00">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="897" y="-298" font-family="sans" font-size="10.00">salmon_merge_on: numreads</text>
<g id="edge10" class="edge"><title>10->3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M958.811,-287.966C995.746,-277.787 1042.77,-264.826 1081.06,-254.274"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1082.4,-257.537 1091.11,-251.506 1080.54,-250.789 1082.4,-257.537"/>
</g>
<!-- 11 -->
<g id="node12" class="node"><title>11</title>
<path fill="none" stroke="#56d87b" stroke-width="2" d="M1130.5,-324C1130.5,-324 999.5,-324 999.5,-324 993.5,-324 987.5,-318 987.5,-312 987.5,-312 987.5,-300 987.5,-300 987.5,-294 993.5,-288 999.5,-288 999.5,-288 1130.5,-288 1130.5,-288 1136.5,-288 1142.5,-294 1142.5,-300 1142.5,-300 1142.5,-312 1142.5,-312 1142.5,-318 1136.5,-324 1130.5,-324"/>
<text text-anchor="middle" x="1065" y="-309" font-family="sans" font-size="10.00">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="1065" y="-298" font-family="sans" font-size="10.00">salmon_merge_on: tpm</text>
<g id="edge11" class="edge"><title>11->3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1086.26,-287.697C1097.09,-278.881 1110.42,-268.032 1122.16,-258.474"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1124.44,-261.132 1129.99,-252.104 1120.02,-255.703 1124.44,-261.132"/>
</g>
<!-- 12 -->
<g id="node13" class="node"><title>12</title>
<path fill="none" stroke="#56d87b" stroke-width="2" d="M1303.5,-324C1303.5,-324 1172.5,-324 1172.5,-324 1166.5,-324 1160.5,-318 1160.5,-312 1160.5,-312 1160.5,-300 1160.5,-300 1160.5,-294 1166.5,-288 1172.5,-288 1172.5,-288 1303.5,-288 1303.5,-288 1309.5,-288 1315.5,-294 1315.5,-300 1315.5,-300 1315.5,-312 1315.5,-312 1315.5,-318 1309.5,-324 1303.5,-324"/>
<text text-anchor="middle" x="1238" y="-309" font-family="sans" font-size="10.00">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="1238" y="-298" font-family="sans" font-size="10.00">salmon_merge_on: numreads</text>
<g id="edge12" class="edge"><title>12->3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1216.49,-287.697C1205.54,-278.881 1192.05,-268.032 1180.18,-258.474"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1182.24,-255.646 1172.26,-252.104 1177.86,-261.1 1182.24,-255.646"/>
<g id="node14" class="node"><title>13</title>
<path fill="none" stroke="#56d8d8" stroke-width="2" d="M1973.5,-612C1973.5,-612 1942.5,-612 1942.5,-612 1936.5,-612 1930.5,-606 1930.5,-600 1930.5,-600 1930.5,-588 1930.5,-588 1930.5,-582 1936.5,-576 1942.5,-576 1942.5,-576 1973.5,-576 1973.5,-576 1979.5,-576 1985.5,-582 1985.5,-588 1985.5,-588 1985.5,-600 1985.5,-600 1985.5,-606 1979.5,-612 1973.5,-612"/>
<text text-anchor="middle" x="1958" y="-591.5" font-family="sans" font-size="10.00">star_rpm</text>
<g id="edge13" class="edge"><title>13->3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1985.7,-591.233C2046.65,-586.769 2189.61,-572.961 2223,-540 2251.78,-511.585 2242,-491.447 2242,-451 2242,-451 2242,-451 2242,-377 2242,-273.61 1461.59,-243.532 1220.86,-236.713"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1220.91,-233.214 1210.82,-236.434 1220.72,-240.211 1220.91,-233.214"/>
<!-- 42 -->
<g id="node43" class="node"><title>42</title>
<path fill="none" stroke="#56d0d8" stroke-width="2" d="M2202,-540C2202,-540 2096,-540 2096,-540 2090,-540 2084,-534 2084,-528 2084,-528 2084,-516 2084,-516 2084,-510 2090,-504 2096,-504 2096,-504 2202,-504 2202,-504 2208,-504 2214,-510 2214,-516 2214,-516 2214,-528 2214,-528 2214,-534 2208,-540 2202,-540"/>
<text text-anchor="middle" x="2149" y="-525" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
<text text-anchor="middle" x="2149" y="-514" font-family="sans" font-size="10.00">unique: Unique</text>
</g>
<!-- 13->42 -->
<g id="edge71" class="edge"><title>13->42</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1985.77,-582.821C2013.67,-572.597 2057.46,-556.549 2092.66,-543.648"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="2094.16,-546.828 2102.34,-540.1 2091.75,-540.255 2094.16,-546.828"/>
</g>
<!-- 45 -->
<g id="node46" class="node"><title>45</title>
<path fill="none" stroke="#56d0d8" stroke-width="2" d="M1932,-540C1932,-540 1826,-540 1826,-540 1820,-540 1814,-534 1814,-528 1814,-528 1814,-516 1814,-516 1814,-510 1820,-504 1826,-504 1826,-504 1932,-504 1932,-504 1938,-504 1944,-510 1944,-516 1944,-516 1944,-528 1944,-528 1944,-534 1938,-540 1932,-540"/>
<text text-anchor="middle" x="1879" y="-525" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
<text text-anchor="middle" x="1879" y="-514" font-family="sans" font-size="10.00">unique: UniqueMultiple</text>
</g>
<!-- 13->45 -->
<g id="edge74" class="edge"><title>13->45</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1938.47,-575.697C1928.62,-566.965 1916.51,-556.24 1905.8,-546.75"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1908.11,-544.117 1898.3,-540.104 1903.47,-549.356 1908.11,-544.117"/>
<g id="node15" class="node"><title>14</title>
<path fill="none" stroke="#56d8d8" stroke-width="2" d="M1652.5,-612C1652.5,-612 1621.5,-612 1621.5,-612 1615.5,-612 1609.5,-606 1609.5,-600 1609.5,-600 1609.5,-588 1609.5,-588 1609.5,-582 1615.5,-576 1621.5,-576 1621.5,-576 1652.5,-576 1652.5,-576 1658.5,-576 1664.5,-582 1664.5,-588 1664.5,-588 1664.5,-600 1664.5,-600 1664.5,-606 1658.5,-612 1652.5,-612"/>
<text text-anchor="middle" x="1637" y="-591.5" font-family="sans" font-size="10.00">star_rpm</text>
<g id="edge14" class="edge"><title>14->3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1609.19,-580.028C1606.1,-578.645 1602.99,-577.277 1600,-576 1560,-558.914 1537.09,-573.204 1509,-540 1482.88,-509.122 1490,-491.447 1490,-451 1490,-451 1490,-451 1490,-377 1490,-261.448 1320.37,-238.32 1221.09,-234.678"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1220.93,-231.172 1210.83,-234.362 1220.71,-238.168 1220.93,-231.172"/>
<g id="node45" class="node"><title>44</title>
<path fill="none" stroke="#56d0d8" stroke-width="2" d="M1784,-540C1784,-540 1678,-540 1678,-540 1672,-540 1666,-534 1666,-528 1666,-528 1666,-516 1666,-516 1666,-510 1672,-504 1678,-504 1678,-504 1784,-504 1784,-504 1790,-504 1796,-510 1796,-516 1796,-516 1796,-528 1796,-528 1796,-534 1790,-540 1784,-540"/>
<text text-anchor="middle" x="1731" y="-525" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
<text text-anchor="middle" x="1731" y="-514" font-family="sans" font-size="10.00">unique: Unique</text>
<g id="edge73" class="edge"><title>14->44</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1660.24,-575.697C1672.19,-566.796 1686.92,-555.823 1699.85,-546.199"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1702.1,-548.884 1708.03,-540.104 1697.92,-543.27 1702.1,-548.884"/>
</g>
<!-- 46 -->
<g id="node47" class="node"><title>46</title>
<path fill="none" stroke="#56d0d8" stroke-width="2" d="M1636,-540C1636,-540 1530,-540 1530,-540 1524,-540 1518,-534 1518,-528 1518,-528 1518,-516 1518,-516 1518,-510 1524,-504 1530,-504 1530,-504 1636,-504 1636,-504 1642,-504 1648,-510 1648,-516 1648,-516 1648,-528 1648,-528 1648,-534 1642,-540 1636,-540"/>
<text text-anchor="middle" x="1583" y="-525" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
<text text-anchor="middle" x="1583" y="-514" font-family="sans" font-size="10.00">unique: UniqueMultiple</text>
</g>
<!-- 14->46 -->
<g id="edge75" class="edge"><title>14->46</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1623.65,-575.697C1617.24,-567.389 1609.44,-557.277 1602.39,-548.141"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1605.07,-545.884 1596.19,-540.104 1599.53,-550.16 1605.07,-545.884"/>
<g id="node16" class="node"><title>15</title>
<path fill="none" stroke="#d6d856" stroke-width="2" d="M1780.5,-324C1780.5,-324 1703.5,-324 1703.5,-324 1697.5,-324 1691.5,-318 1691.5,-312 1691.5,-312 1691.5,-300 1691.5,-300 1691.5,-294 1697.5,-288 1703.5,-288 1703.5,-288 1780.5,-288 1780.5,-288 1786.5,-288 1792.5,-294 1792.5,-300 1792.5,-300 1792.5,-312 1792.5,-312 1792.5,-318 1786.5,-324 1780.5,-324"/>
<text text-anchor="middle" x="1742" y="-303.5" font-family="sans" font-size="10.00">alfa_concat_results</text>
<g id="edge15" class="edge"><title>15->3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1691.36,-299.002C1585.68,-286.485 1341.54,-257.568 1220.96,-243.287"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1221.09,-239.777 1210.74,-242.076 1220.26,-246.728 1221.09,-239.777"/>
<g id="node17" class="node"><title>16</title>
<path fill="none" stroke="#97d856" stroke-width="2" d="M1322,-830.5C1322,-830.5 1210,-830.5 1210,-830.5 1204,-830.5 1198,-824.5 1198,-818.5 1198,-818.5 1198,-806.5 1198,-806.5 1198,-800.5 1204,-794.5 1210,-794.5 1210,-794.5 1322,-794.5 1322,-794.5 1328,-794.5 1334,-800.5 1334,-806.5 1334,-806.5 1334,-818.5 1334,-818.5 1334,-824.5 1328,-830.5 1322,-830.5"/>
<text text-anchor="middle" x="1266" y="-810" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
<g id="edge16" class="edge"><title>16->6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1266,-794.151C1266,-767.022 1266,-712.909 1266,-667 1266,-667 1266,-667 1266,-593 1266,-549.905 1288.6,-504.262 1305.08,-476.697"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1308.13,-478.421 1310.4,-468.072 1302.17,-474.749 1308.13,-478.421"/>
<g id="node21" class="node"><title>20</title>
<path fill="none" stroke="#a7d856" stroke-width="2" d="M1108.5,-396C1108.5,-396 1005.5,-396 1005.5,-396 999.5,-396 993.5,-390 993.5,-384 993.5,-384 993.5,-372 993.5,-372 993.5,-366 999.5,-360 1005.5,-360 1005.5,-360 1108.5,-360 1108.5,-360 1114.5,-360 1120.5,-366 1120.5,-372 1120.5,-372 1120.5,-384 1120.5,-384 1120.5,-390 1114.5,-396 1108.5,-396"/>
<text text-anchor="middle" x="1057" y="-375.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
<g id="edge40" class="edge"><title>16->20</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1258.31,-794.093C1247.21,-767.328 1228,-714.21 1228,-667 1228,-667 1228,-667 1228,-593 1228,-552.553 1230.02,-538.557 1209,-504 1181.67,-459.06 1132.24,-422.965 1097.17,-401.329"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1098.96,-398.319 1088.59,-396.144 1095.34,-404.31 1098.96,-398.319"/>
<g id="node23" class="node"><title>22</title>
<path fill="none" stroke="#56d8b9" stroke-width="2" d="M1822.5,-756C1822.5,-756 1733.5,-756 1733.5,-756 1727.5,-756 1721.5,-750 1721.5,-744 1721.5,-744 1721.5,-732 1721.5,-732 1721.5,-726 1727.5,-720 1733.5,-720 1733.5,-720 1822.5,-720 1822.5,-720 1828.5,-720 1834.5,-726 1834.5,-732 1834.5,-732 1834.5,-744 1834.5,-744 1834.5,-750 1828.5,-756 1822.5,-756"/>
<text text-anchor="middle" x="1778" y="-735.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
<g id="edge45" class="edge"><title>16->22</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1334.25,-801.835C1432.73,-787.891 1613.53,-762.29 1711.19,-748.46"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1711.83,-751.905 1721.24,-747.037 1710.85,-744.974 1711.83,-751.905"/>
<g id="node18" class="node"><title>17</title>
<path fill="none" stroke="#d88556" stroke-width="2" d="M1188,-540C1188,-540 1104,-540 1104,-540 1098,-540 1092,-534 1092,-528 1092,-528 1092,-516 1092,-516 1092,-510 1098,-504 1104,-504 1104,-504 1188,-504 1188,-504 1194,-504 1200,-510 1200,-516 1200,-516 1200,-528 1200,-528 1200,-534 1194,-540 1188,-540"/>
<text text-anchor="middle" x="1146" y="-519.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
<g id="edge17" class="edge"><title>17->6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1189.05,-503.876C1213.33,-494.222 1243.84,-482.087 1269.51,-471.878"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1271.09,-475.016 1279.09,-468.068 1268.5,-468.512 1271.09,-475.016"/>
<g id="edge19" class="edge"><title>17->7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1091.82,-505.829C1088.85,-505.169 1085.89,-504.553 1083,-504 952.4,-479.05 798.675,-464.292 705.335,-456.922"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="705.339,-453.412 695.097,-456.124 704.795,-460.391 705.339,-453.412"/>
<g id="node19" class="node"><title>18</title>
<path fill="none" stroke="#5663d8" stroke-width="2" d="M755,-830.5C755,-830.5 659,-830.5 659,-830.5 653,-830.5 647,-824.5 647,-818.5 647,-818.5 647,-806.5 647,-806.5 647,-800.5 653,-794.5 659,-794.5 659,-794.5 755,-794.5 755,-794.5 761,-794.5 767,-800.5 767,-806.5 767,-806.5 767,-818.5 767,-818.5 767,-824.5 761,-830.5 755,-830.5"/>
<text text-anchor="middle" x="707" y="-810" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
<g id="edge18" class="edge"><title>18->7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M692.155,-794.122C671.607,-768.23 637,-717.176 637,-667 637,-667 637,-667 637,-593 637,-552.931 630.244,-506.949 625.25,-478.433"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="628.661,-477.627 623.44,-468.408 621.773,-478.871 628.661,-477.627"/>
<g id="node22" class="node"><title>21</title>
<path fill="none" stroke="#56d89a" stroke-width="2" d="M948.5,-396C948.5,-396 861.5,-396 861.5,-396 855.5,-396 849.5,-390 849.5,-384 849.5,-384 849.5,-372 849.5,-372 849.5,-366 855.5,-360 861.5,-360 861.5,-360 948.5,-360 948.5,-360 954.5,-360 960.5,-366 960.5,-372 960.5,-372 960.5,-384 960.5,-384 960.5,-390 954.5,-396 948.5,-396"/>
<text text-anchor="middle" x="905" y="-375.5" font-family="sans" font-size="10.00">quantification_salmon</text>
<g id="edge42" class="edge"><title>18->21</title>
<path fill="none" stroke="grey" stroke-width="2" d="M707,-794.151C707,-767.022 707,-712.909 707,-667 707,-667 707,-667 707,-593 707,-552.553 703.64,-537.704 726,-504 757.754,-456.137 814.637,-421.138 855.772,-400.545"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="857.372,-403.659 864.817,-396.121 854.296,-397.371 857.372,-403.659"/>
<g id="node25" class="node"><title>24</title>
<path fill="none" stroke="#d8bc56" stroke-width="2" d="M1619.5,-756C1619.5,-756 1546.5,-756 1546.5,-756 1540.5,-756 1534.5,-750 1534.5,-744 1534.5,-744 1534.5,-732 1534.5,-732 1534.5,-726 1540.5,-720 1546.5,-720 1546.5,-720 1619.5,-720 1619.5,-720 1625.5,-720 1631.5,-726 1631.5,-732 1631.5,-732 1631.5,-744 1631.5,-744 1631.5,-750 1625.5,-756 1619.5,-756"/>
<text text-anchor="middle" x="1583" y="-735.5" font-family="sans" font-size="10.00">map_genome_star</text>
<g id="edge48" class="edge"><title>18->24</title>
<path fill="none" stroke="grey" stroke-width="2" d="M767.211,-806.517C927.87,-793.22 1365.27,-757.02 1524.24,-743.863"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1524.63,-747.343 1534.31,-743.03 1524.05,-740.367 1524.63,-747.343"/>
<g id="node20" class="node"><title>19</title>
<path fill="none" stroke="#5673d8" stroke-width="2" d="M1450,-540C1450,-540 1374,-540 1374,-540 1368,-540 1362,-534 1362,-528 1362,-528 1362,-516 1362,-516 1362,-510 1368,-504 1374,-504 1374,-504 1450,-504 1450,-504 1456,-504 1462,-510 1462,-516 1462,-516 1462,-528 1462,-528 1462,-534 1456,-540 1450,-540"/>
<text text-anchor="middle" x="1412" y="-519.5" font-family="sans" font-size="10.00">merge_TIN_scores</text>
<g id="edge20" class="edge"><title>19->8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1412.67,-503.815C1413.06,-493.443 1413.57,-479.963 1414,-468 1414.74,-447.272 1415.53,-423.828 1416.11,-406.206"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1419.61,-406.172 1416.45,-396.063 1412.62,-405.942 1419.61,-406.172"/>
<g id="edge21" class="edge"><title>20->9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M993.212,-363.003C942.204,-351.81 870.473,-336.069 816.041,-324.125"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="816.606,-320.666 806.088,-321.941 815.105,-327.503 816.606,-320.666"/>
<g id="edge23" class="edge"><title>20->10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1017.86,-359.876C995.987,-350.307 968.543,-338.3 945.338,-328.148"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="946.578,-324.87 936.013,-324.068 943.772,-331.283 946.578,-324.87"/>
<g id="edge25" class="edge"><title>20->11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1058.98,-359.697C1059.86,-351.983 1060.92,-342.712 1061.9,-334.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1065.39,-334.437 1063.05,-324.104 1058.43,-333.642 1065.39,-334.437"/>
<g id="edge27" class="edge"><title>20->12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1101.28,-359.876C1126.35,-350.179 1157.9,-337.98 1184.37,-327.743"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1185.8,-330.94 1193.87,-324.068 1183.28,-324.411 1185.8,-330.94"/>
<g id="edge22" class="edge"><title>21->9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M864.147,-359.876C841.216,-350.264 812.418,-338.193 788.13,-328.013"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="789.296,-324.706 778.72,-324.068 786.59,-331.162 789.296,-324.706"/>
<g id="edge24" class="edge"><title>21->10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M903.022,-359.697C902.141,-351.983 901.081,-342.712 900.099,-334.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="903.568,-333.642 898.955,-324.104 896.613,-334.437 903.568,-333.642"/>
<g id="edge26" class="edge"><title>21->11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M944.14,-359.876C966.013,-350.307 993.457,-338.3 1016.66,-328.148"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1018.23,-331.283 1025.99,-324.068 1015.42,-324.87 1018.23,-331.283"/>
<g id="edge28" class="edge"><title>21->12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M960.512,-365.182C968.722,-363.44 977.081,-361.671 985,-360 1040.05,-348.385 1101.85,-335.436 1150.6,-325.245"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1151.41,-328.652 1160.48,-323.179 1149.97,-321.8 1151.41,-328.652"/>
<g id="edge29" class="edge"><title>22->13</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1834.89,-734.427C1872.5,-729.541 1919.73,-716.711 1947,-684 1961.13,-667.049 1962.99,-641.583 1961.83,-622.229"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1965.31,-621.847 1960.93,-612.198 1958.33,-622.469 1965.31,-621.847"/>
<g id="node24" class="node"><title>23</title>
<path fill="none" stroke="#56a2d8" stroke-width="2" d="M1926,-684C1926,-684 1776,-684 1776,-684 1770,-684 1764,-678 1764,-672 1764,-672 1764,-660 1764,-660 1764,-654 1770,-648 1776,-648 1776,-648 1926,-648 1926,-648 1932,-648 1938,-654 1938,-660 1938,-660 1938,-672 1938,-672 1938,-678 1932,-684 1926,-684"/>
<text text-anchor="middle" x="1851" y="-669" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1851" y="-658" font-family="sans" font-size="10.00">seqmode: paired_end</text>
<g id="edge46" class="edge"><title>22->23</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1796.04,-719.697C1805.06,-711.05 1816.12,-700.449 1825.94,-691.027"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1828.37,-693.552 1833.16,-684.104 1823.52,-688.499 1828.37,-693.552"/>
<g id="node32" class="node"><title>31</title>
<path fill="none" stroke="#56d86b" stroke-width="2" d="M1579,-612C1579,-612 1491,-612 1491,-612 1485,-612 1479,-606 1479,-600 1479,-600 1479,-588 1479,-588 1479,-582 1485,-576 1491,-576 1491,-576 1579,-576 1579,-576 1585,-576 1591,-582 1591,-588 1591,-588 1591,-600 1591,-600 1591,-606 1585,-612 1579,-612"/>
<text text-anchor="middle" x="1535" y="-591.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
<g id="edge54" class="edge"><title>22->31</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1762.74,-719.786C1744.5,-700.11 1712.25,-668.045 1679,-648 1654.93,-633.488 1626.23,-621.935 1600.82,-613.367"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1601.85,-610.021 1591.25,-610.229 1599.67,-616.672 1601.85,-610.021"/>
<g id="edge30" class="edge"><title>23->13</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1877.18,-647.876C1891.04,-638.808 1908.24,-627.552 1923.21,-617.759"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1925.27,-620.593 1931.72,-612.19 1921.44,-614.735 1925.27,-620.593"/>
<g id="edge55" class="edge"><title>23->31</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1766.32,-647.996C1717.81,-638.018 1655.86,-624.873 1601,-612 1600.9,-611.976 1600.8,-611.953 1600.7,-611.929"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1601.67,-608.563 1591.13,-609.633 1600.04,-615.37 1601.67,-608.563"/>
<g id="edge31" class="edge"><title>24->14</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1631.68,-722.094C1649.83,-713.907 1668.55,-701.707 1679,-684 1691.28,-663.202 1677.19,-638.237 1662.11,-620.048"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1664.44,-617.398 1655.21,-612.207 1659.19,-622.025 1664.44,-617.398"/>
<g id="node26" class="node"><title>25</title>
<path fill="none" stroke="#56a2d8" stroke-width="2" d="M1658,-684C1658,-684 1508,-684 1508,-684 1502,-684 1496,-678 1496,-672 1496,-672 1496,-660 1496,-660 1496,-654 1502,-648 1508,-648 1508,-648 1658,-648 1658,-648 1664,-648 1670,-654 1670,-660 1670,-660 1670,-672 1670,-672 1670,-678 1664,-684 1658,-684"/>
<text text-anchor="middle" x="1583" y="-669" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1583" y="-658" font-family="sans" font-size="10.00">seqmode: single_end</text>
<g id="edge49" class="edge"><title>24->25</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1583,-719.697C1583,-711.983 1583,-702.712 1583,-694.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1586.5,-694.104 1583,-684.104 1579.5,-694.104 1586.5,-694.104"/>
<g id="node33" class="node"><title>32</title>
<path fill="none" stroke="#56d86b" stroke-width="2" d="M1449,-612C1449,-612 1361,-612 1361,-612 1355,-612 1349,-606 1349,-600 1349,-600 1349,-588 1349,-588 1349,-582 1355,-576 1361,-576 1361,-576 1449,-576 1449,-576 1455,-576 1461,-582 1461,-588 1461,-588 1461,-600 1461,-600 1461,-606 1455,-612 1449,-612"/>
<text text-anchor="middle" x="1405" y="-591.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
<g id="edge57" class="edge"><title>24->32</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1534.42,-734.18C1466.9,-729.131 1350.04,-715.914 1324,-684 1313.88,-671.604 1316.39,-662.074 1324,-648 1330.82,-635.391 1342.09,-625.3 1354.08,-617.45"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1356.14,-620.294 1362.89,-612.126 1352.52,-614.303 1356.14,-620.294"/>
<g id="edge32" class="edge"><title>25->14</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1596.35,-647.697C1602.76,-639.389 1610.56,-629.277 1617.61,-620.141"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1620.47,-622.16 1623.81,-612.104 1614.93,-617.884 1620.47,-622.16"/>
<g id="edge58" class="edge"><title>25->32</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1539.46,-647.876C1514.8,-638.179 1483.78,-625.98 1457.75,-615.743"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1458.99,-612.471 1448.4,-612.068 1456.43,-618.985 1458.99,-612.471"/>
<g id="node27" class="node"><title>26</title>
<path fill="none" stroke="#88d856" stroke-width="2" d="M1905.5,-396C1905.5,-396 1824.5,-396 1824.5,-396 1818.5,-396 1812.5,-390 1812.5,-384 1812.5,-384 1812.5,-372 1812.5,-372 1812.5,-366 1818.5,-360 1824.5,-360 1824.5,-360 1905.5,-360 1905.5,-360 1911.5,-360 1917.5,-366 1917.5,-372 1917.5,-372 1917.5,-384 1917.5,-384 1917.5,-390 1911.5,-396 1905.5,-396"/>
<text text-anchor="middle" x="1865" y="-375.5" font-family="sans" font-size="10.00">alfa_qc_all_samples</text>
<g id="edge33" class="edge"><title>26->15</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1834.91,-359.876C1818.68,-350.639 1798.46,-339.131 1781.03,-329.212"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1782.63,-326.094 1772.2,-324.19 1779.16,-332.178 1782.63,-326.094"/>
<g id="node28" class="node"><title>27</title>
<path fill="none" stroke="#88d856" stroke-width="2" d="M1782.5,-396C1782.5,-396 1701.5,-396 1701.5,-396 1695.5,-396 1689.5,-390 1689.5,-384 1689.5,-384 1689.5,-372 1689.5,-372 1689.5,-366 1695.5,-360 1701.5,-360 1701.5,-360 1782.5,-360 1782.5,-360 1788.5,-360 1794.5,-366 1794.5,-372 1794.5,-372 1794.5,-384 1794.5,-384 1794.5,-390 1788.5,-396 1782.5,-396"/>
<text text-anchor="middle" x="1742" y="-375.5" font-family="sans" font-size="10.00">alfa_qc_all_samples</text>
<g id="edge34" class="edge"><title>27->15</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1742,-359.697C1742,-351.983 1742,-342.712 1742,-334.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1745.5,-334.104 1742,-324.104 1738.5,-334.104 1745.5,-334.104"/>
<g id="node29" class="node"><title>28</title>
<path fill="none" stroke="#d85656" stroke-width="2" d="M1400,-905C1400,-905 1132,-905 1132,-905 1126,-905 1120,-899 1120,-893 1120,-893 1120,-881 1120,-881 1120,-875 1126,-869 1132,-869 1132,-869 1400,-869 1400,-869 1406,-869 1412,-875 1412,-881 1412,-881 1412,-893 1412,-893 1412,-899 1406,-905 1400,-905"/>
<text text-anchor="middle" x="1266" y="-890" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1266" y="-879" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
<g id="edge35" class="edge"><title>28->16</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1266,-868.819C1266,-860.422 1266,-850.116 1266,-840.686"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1269.5,-840.558 1266,-830.558 1262.5,-840.558 1269.5,-840.558"/>
<g id="node30" class="node"><title>29</title>
<path fill="none" stroke="#56d88a" stroke-width="2" d="M1106.5,-612C1106.5,-612 1005.5,-612 1005.5,-612 999.5,-612 993.5,-606 993.5,-600 993.5,-600 993.5,-588 993.5,-588 993.5,-582 999.5,-576 1005.5,-576 1005.5,-576 1106.5,-576 1106.5,-576 1112.5,-576 1118.5,-582 1118.5,-588 1118.5,-588 1118.5,-600 1118.5,-600 1118.5,-606 1112.5,-612 1106.5,-612"/>
<text text-anchor="middle" x="1056" y="-597" font-family="sans" font-size="10.00">extract_transcriptome</text>
<text text-anchor="middle" x="1056" y="-586" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
<g id="edge36" class="edge"><title>29->17</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1078.25,-575.697C1089.58,-566.881 1103.53,-556.032 1115.82,-546.474"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1118.26,-549.007 1124.01,-540.104 1113.97,-543.481 1118.26,-549.007"/>
<!-- 40 -->
<g id="node41" class="node"><title>40</title>
<path fill="none" stroke="#d8a456" stroke-width="2" d="M1061.5,-540C1061.5,-540 890.5,-540 890.5,-540 884.5,-540 878.5,-534 878.5,-528 878.5,-528 878.5,-516 878.5,-516 878.5,-510 884.5,-504 890.5,-504 890.5,-504 1061.5,-504 1061.5,-504 1067.5,-504 1073.5,-510 1073.5,-516 1073.5,-516 1073.5,-528 1073.5,-528 1073.5,-534 1067.5,-540 1061.5,-540"/>
<text text-anchor="middle" x="976" y="-519.5" font-family="sans" font-size="10.00">concatenate_transcriptome_and_genome</text>
</g>
<!-- 29->40 -->
<g id="edge70" class="edge"><title>29->40</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1036.22,-575.697C1026.25,-566.965 1013.99,-556.24 1003.14,-546.75"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1005.38,-544.055 995.548,-540.104 1000.77,-549.323 1005.38,-544.055"/>
<g id="node31" class="node"><title>30</title>
<path fill="none" stroke="#56b1d8" stroke-width="2" d="M847,-905C847,-905 567,-905 567,-905 561,-905 555,-899 555,-893 555,-893 555,-881 555,-881 555,-875 561,-869 567,-869 567,-869 847,-869 847,-869 853,-869 859,-875 859,-881 859,-881 859,-893 859,-893 859,-899 853,-905 847,-905"/>
<text text-anchor="middle" x="707" y="-890" font-family="sans" font-size="10.00">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="707" y="-879" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
<g id="edge37" class="edge"><title>30->18</title>
<path fill="none" stroke="grey" stroke-width="2" d="M707,-868.819C707,-860.422 707,-850.116 707,-840.686"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="710.5,-840.558 707,-830.558 703.5,-840.558 710.5,-840.558"/>
<g id="edge38" class="edge"><title>31->19</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1504.91,-575.876C1488.68,-566.639 1468.46,-555.131 1451.03,-545.212"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1452.63,-542.094 1442.2,-540.19 1449.16,-548.178 1452.63,-542.094"/>
<g id="edge39" class="edge"><title>32->19</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1406.73,-575.697C1407.5,-567.983 1408.43,-558.712 1409.29,-550.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1412.78,-550.403 1410.29,-540.104 1405.81,-549.706 1412.78,-550.403"/>
</g>
<!-- 33 -->
<g id="node34" class="node"><title>33</title>
<path fill="none" stroke="#56d8c9" stroke-width="2" d="M979.5,-468C979.5,-468 894.5,-468 894.5,-468 888.5,-468 882.5,-462 882.5,-456 882.5,-456 882.5,-444 882.5,-444 882.5,-438 888.5,-432 894.5,-432 894.5,-432 979.5,-432 979.5,-432 985.5,-432 991.5,-438 991.5,-444 991.5,-444 991.5,-456 991.5,-456 991.5,-462 985.5,-468 979.5,-468"/>
<text text-anchor="middle" x="937" y="-447.5" font-family="sans" font-size="10.00">create_index_salmon</text>
<g id="edge41" class="edge"><title>33->20</title>
<path fill="none" stroke="grey" stroke-width="2" d="M966.355,-431.876C982.045,-422.724 1001.56,-411.342 1018.45,-401.485"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1020.66,-404.252 1027.53,-396.19 1017.13,-398.205 1020.66,-404.252"/>
<g id="edge43" class="edge"><title>33->21</title>
<path fill="none" stroke="grey" stroke-width="2" d="M929.09,-431.697C925.447,-423.728 921.046,-414.1 917.006,-405.264"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="920.16,-403.744 912.819,-396.104 913.794,-406.654 920.16,-403.744"/>
<g id="node35" class="node"><title>34</title>
<path fill="none" stroke="#70d856" stroke-width="2" d="M1828.5,-833C1828.5,-833 1727.5,-833 1727.5,-833 1721.5,-833 1715.5,-827 1715.5,-821 1715.5,-821 1715.5,-804 1715.5,-804 1715.5,-798 1721.5,-792 1727.5,-792 1727.5,-792 1828.5,-792 1828.5,-792 1834.5,-792 1840.5,-798 1840.5,-804 1840.5,-804 1840.5,-821 1840.5,-821 1840.5,-827 1834.5,-833 1828.5,-833"/>
<text text-anchor="middle" x="1778" y="-821" font-family="sans" font-size="10.00">create_index_star</text>
<text text-anchor="middle" x="1778" y="-810" font-family="sans" font-size="10.00">index_size: 75</text>
<text text-anchor="middle" x="1778" y="-799" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
<g id="edge44" class="edge"><title>34->22</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1778,-791.689C1778,-783.907 1778,-774.842 1778,-766.447"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1781.5,-766.319 1778,-756.319 1774.5,-766.32 1781.5,-766.319"/>
<g id="edge47" class="edge"><title>34->24</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1725.49,-791.976C1698.54,-781.959 1665.73,-769.76 1638.39,-759.594"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1639.56,-756.294 1628.96,-756.09 1637.12,-762.855 1639.56,-756.294"/>
<!-- 43 -->
<g id="node44" class="node"><title>43</title>
<path fill="none" stroke="#5682d8" stroke-width="2" d="M2054,-540C2054,-540 1974,-540 1974,-540 1968,-540 1962,-534 1962,-528 1962,-528 1962,-516 1962,-516 1962,-510 1968,-504 1974,-504 1974,-504 2054,-504 2054,-504 2060,-504 2066,-510 2066,-516 2066,-516 2066,-528 2066,-528 2066,-534 2060,-540 2054,-540"/>
<text text-anchor="middle" x="2014" y="-519.5" font-family="sans" font-size="10.00">generate_alfa_index</text>
<!-- 34->43 -->
<g id="edge72" class="edge"><title>34->43</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1821.52,-791.833C1863.92,-770.678 1927.59,-733.322 1967,-684 1998.41,-644.69 2008.83,-585.094 2012.29,-550.508"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="2015.8,-550.48 2013.18,-540.215 2008.83,-549.874 2015.8,-550.48"/>
<g id="node36" class="node"><title>35</title>
<path fill="none" stroke="#d8cb56" stroke-width="2" d="M2029,-468C2029,-468 1999,-468 1999,-468 1993,-468 1987,-462 1987,-456 1987,-456 1987,-444 1987,-444 1987,-438 1993,-432 1999,-432 1999,-432 2029,-432 2029,-432 2035,-432 2041,-438 2041,-444 2041,-444 2041,-456 2041,-456 2041,-462 2035,-468 2029,-468"/>
<text text-anchor="middle" x="2014" y="-447.5" font-family="sans" font-size="10.00">alfa_qc</text>
<g id="edge50" class="edge"><title>35->26</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1986.67,-436.161C1965.44,-426.186 1935.53,-412.133 1910.67,-400.456"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1911.96,-397.196 1901.42,-396.111 1908.99,-403.531 1911.96,-397.196"/>
<g id="node37" class="node"><title>36</title>
<path fill="none" stroke="#d8cb56" stroke-width="2" d="M1854,-468C1854,-468 1824,-468 1824,-468 1818,-468 1812,-462 1812,-456 1812,-456 1812,-444 1812,-444 1812,-438 1818,-432 1824,-432 1824,-432 1854,-432 1854,-432 1860,-432 1866,-438 1866,-444 1866,-444 1866,-456 1866,-456 1866,-462 1860,-468 1854,-468"/>
<text text-anchor="middle" x="1839" y="-447.5" font-family="sans" font-size="10.00">alfa_qc</text>
<g id="edge51" class="edge"><title>36->26</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1845.43,-431.697C1848.36,-423.813 1851.89,-414.304 1855.14,-405.546"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1858.45,-406.697 1858.65,-396.104 1851.88,-404.26 1858.45,-406.697"/>
<g id="node38" class="node"><title>37</title>
<path fill="none" stroke="#d8cb56" stroke-width="2" d="M1926,-468C1926,-468 1896,-468 1896,-468 1890,-468 1884,-462 1884,-456 1884,-456 1884,-444 1884,-444 1884,-438 1890,-432 1896,-432 1896,-432 1926,-432 1926,-432 1932,-432 1938,-438 1938,-444 1938,-444 1938,-456 1938,-456 1938,-462 1932,-468 1926,-468"/>
<text text-anchor="middle" x="1911" y="-447.5" font-family="sans" font-size="10.00">alfa_qc</text>
<g id="edge52" class="edge"><title>37->27</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1883.96,-436.009C1880.95,-434.629 1877.92,-433.268 1875,-432 1849.34,-420.843 1820.54,-409.251 1796.31,-399.763"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1797.51,-396.475 1786.92,-396.102 1794.97,-402.997 1797.51,-396.475"/>
<g id="node39" class="node"><title>38</title>
<path fill="none" stroke="#d8cb56" stroke-width="2" d="M1757,-468C1757,-468 1727,-468 1727,-468 1721,-468 1715,-462 1715,-456 1715,-456 1715,-444 1715,-444 1715,-438 1721,-432 1727,-432 1727,-432 1757,-432 1757,-432 1763,-432 1769,-438 1769,-444 1769,-444 1769,-456 1769,-456 1769,-462 1763,-468 1757,-468"/>
<text text-anchor="middle" x="1742" y="-447.5" font-family="sans" font-size="10.00">alfa_qc</text>
<g id="edge53" class="edge"><title>38->27</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1742,-431.697C1742,-423.983 1742,-414.712 1742,-406.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1745.5,-406.104 1742,-396.104 1738.5,-406.104 1745.5,-406.104"/>
<g id="node40" class="node"><title>39</title>
<path fill="none" stroke="#5692d8" stroke-width="2" d="M1465.5,-684C1465.5,-684 1344.5,-684 1344.5,-684 1338.5,-684 1332.5,-678 1332.5,-672 1332.5,-672 1332.5,-660 1332.5,-660 1332.5,-654 1338.5,-648 1344.5,-648 1344.5,-648 1465.5,-648 1465.5,-648 1471.5,-648 1477.5,-654 1477.5,-660 1477.5,-660 1477.5,-672 1477.5,-672 1477.5,-678 1471.5,-684 1465.5,-684"/>
<text text-anchor="middle" x="1405" y="-663.5" font-family="sans" font-size="10.00">extract_transcripts_as_bed12</text>
<g id="edge56" class="edge"><title>39->31</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1436.8,-647.876C1454.11,-638.554 1475.72,-626.919 1494.26,-616.939"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1495.93,-620.012 1503.08,-612.19 1492.61,-613.849 1495.93,-620.012"/>
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
<g id="edge59" class="edge"><title>39->32</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1405,-647.697C1405,-639.983 1405,-630.712 1405,-622.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1408.5,-622.104 1405,-612.104 1401.5,-622.104 1408.5,-622.104"/>
</g>
<!-- 40->33 -->
<g id="edge60" class="edge"><title>40->33</title>
<path fill="none" stroke="grey" stroke-width="2" d="M966.36,-503.697C961.873,-495.644 956.441,-485.894 951.476,-476.982"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="954.454,-475.137 946.53,-468.104 948.339,-478.544 954.454,-475.137"/>
</g>
<!-- 41 -->
<g id="node42" class="node"><title>41</title>
<path fill="none" stroke="#d8ac56" stroke-width="2" d="M848.5,-540C848.5,-540 747.5,-540 747.5,-540 741.5,-540 735.5,-534 735.5,-528 735.5,-528 735.5,-516 735.5,-516 735.5,-510 741.5,-504 747.5,-504 747.5,-504 848.5,-504 848.5,-504 854.5,-504 860.5,-510 860.5,-516 860.5,-516 860.5,-528 860.5,-528 860.5,-534 854.5,-540 848.5,-540"/>
<text text-anchor="middle" x="798" y="-525" font-family="sans" font-size="10.00">extract_decoys_salmon</text>
<text text-anchor="middle" x="798" y="-514" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
</g>
<!-- 41->33 -->
<g id="edge61" class="edge"><title>41->33</title>
<path fill="none" stroke="grey" stroke-width="2" d="M832.003,-503.876C850.598,-494.512 873.827,-482.814 893.706,-472.803"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="895.509,-475.814 902.866,-468.19 892.36,-469.562 895.509,-475.814"/>
</g>
<!-- 42->35 -->
<g id="edge62" class="edge"><title>42->35</title>
<path fill="none" stroke="grey" stroke-width="2" d="M2115.98,-503.876C2096.07,-493.557 2070.71,-480.403 2050.25,-469.797"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="2051.73,-466.619 2041.24,-465.123 2048.5,-472.833 2051.73,-466.619"/>
</g>
<!-- 43->35 -->
<g id="edge63" class="edge"><title>43->35</title>
<path fill="none" stroke="grey" stroke-width="2" d="M2014,-503.697C2014,-495.983 2014,-486.712 2014,-478.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="2017.5,-478.104 2014,-468.104 2010.5,-478.104 2017.5,-478.104"/>
</g>
<!-- 43->36 -->
<g id="edge65" class="edge"><title>43->36</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1966.67,-503.982C1941.84,-494.818 1910.78,-482.99 1875.56,-468.1"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1876.6,-464.736 1866.03,-464.035 1873.85,-471.176 1876.6,-464.736"/>
<g id="edge67" class="edge"><title>43->37</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1988.8,-503.876C1975.59,-494.893 1959.21,-483.763 1944.89,-474.034"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1946.53,-470.916 1936.29,-468.19 1942.6,-476.705 1946.53,-470.916"/>
</g>
<!-- 43->38 -->
<g id="edge69" class="edge"><title>43->38</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1961.79,-506.316C1958.82,-505.522 1955.87,-504.745 1953,-504 1886.63,-486.794 1869.37,-485.206 1803,-468 1795.22,-465.982 1786.9,-463.73 1779,-461.543"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1779.85,-458.145 1769.27,-458.828 1777.96,-464.887 1779.85,-458.145"/>
</g>
<!-- 44->36 -->
<g id="edge64" class="edge"><title>44->36</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1757.42,-503.876C1771.41,-494.808 1788.78,-483.552 1803.89,-473.759"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1805.99,-476.566 1812.48,-468.19 1802.18,-470.692 1805.99,-476.566"/>
</g>
<!-- 45->37 -->
<g id="edge66" class="edge"><title>45->37</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1886.91,-503.697C1890.55,-495.728 1894.95,-486.1 1898.99,-477.264"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1902.21,-478.654 1903.18,-468.104 1895.84,-475.744 1902.21,-478.654"/>
</g>
<!-- 46->38 -->
<g id="edge68" class="edge"><title>46->38</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1621.9,-503.876C1647.49,-492.607 1680.77,-477.957 1705.8,-466.936"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1707.22,-470.138 1714.96,-462.905 1704.4,-463.731 1707.22,-470.138"/>