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<!-- Title: snakemake_dag Pages: 1 -->
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<g id="node1" class="node"><title>0</title>
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<text text-anchor="middle" x="1151" y="-15.5" font-family="sans" font-size="10.00">finish</text>
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<!-- 1 -->
<g id="node2" class="node"><title>1</title>
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<text text-anchor="middle" x="1151" y="-87.5" font-family="sans" font-size="10.00">MULTIQC_report</text>
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<!-- 1&#45;&gt;0 -->
<g id="edge1" class="edge"><title>1&#45;&gt;0</title>
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<g id="node3" class="node"><title>2</title>
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<text text-anchor="middle" x="1151" y="-159.5" font-family="sans" font-size="10.00">prepare_MultiQC_config</text>
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<g id="edge2" class="edge"><title>2&#45;&gt;1</title>
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<g id="node4" class="node"><title>3</title>
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<text text-anchor="middle" x="1151" y="-231.5" font-family="sans" font-size="10.00">prepare_files_for_report</text>
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<g id="edge3" class="edge"><title>3&#45;&gt;2</title>
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<g id="node5" class="node"><title>4</title>
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<text text-anchor="middle" x="146" y="-309" font-family="sans" font-size="10.00">pe_fastqc</text>
<text text-anchor="middle" x="146" y="-298" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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<g id="edge4" class="edge"><title>4&#45;&gt;3</title>
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<!-- 5 -->
<g id="node6" class="node"><title>5</title>
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<text text-anchor="middle" x="462" y="-309" font-family="sans" font-size="10.00">fastqc</text>
<text text-anchor="middle" x="462" y="-298" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<g id="edge5" class="edge"><title>5&#45;&gt;3</title>
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<g id="node7" class="node"><title>6</title>
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<text text-anchor="middle" x="1322" y="-447.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
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<g id="edge6" class="edge"><title>6&#45;&gt;3</title>
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<g id="node8" class="node"><title>7</title>
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<text text-anchor="middle" x="620" y="-447.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
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<!-- 7&#45;&gt;3 -->
<g id="edge7" class="edge"><title>7&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M618.625,-431.954C616.973,-398.6 618.624,-324.763 661,-288 692.11,-261.01 953.591,-244.639 1081.32,-238.181"/>
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<g id="node9" class="node"><title>8</title>
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<text text-anchor="middle" x="1417" y="-375.5" font-family="sans" font-size="10.00">plot_TIN_scores</text>
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<g id="edge8" class="edge"><title>8&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1410.19,-359.799C1401.28,-339.516 1383.69,-306.261 1358,-288 1317.83,-259.444 1263.61,-246.253 1220.74,-240.17"/>
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<g id="node10" class="node"><title>9</title>
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<text text-anchor="middle" x="738" y="-309" font-family="sans" font-size="10.00">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="738" y="-298" font-family="sans" font-size="10.00">salmon_merge_on: tpm</text>
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<!-- 9&#45;&gt;3 -->
<g id="edge9" class="edge"><title>9&#45;&gt;3</title>
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<g id="node11" class="node"><title>10</title>
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<text text-anchor="middle" x="897" y="-309" font-family="sans" font-size="10.00">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="897" y="-298" font-family="sans" font-size="10.00">salmon_merge_on: numreads</text>
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<!-- 10&#45;&gt;3 -->
<g id="edge10" class="edge"><title>10&#45;&gt;3</title>
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<g id="node12" class="node"><title>11</title>
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<text text-anchor="middle" x="1065" y="-309" font-family="sans" font-size="10.00">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="1065" y="-298" font-family="sans" font-size="10.00">salmon_merge_on: tpm</text>
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<!-- 11&#45;&gt;3 -->
<g id="edge11" class="edge"><title>11&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1086.26,-287.697C1097.09,-278.881 1110.42,-268.032 1122.16,-258.474"/>
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<g id="node13" class="node"><title>12</title>
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<text text-anchor="middle" x="1238" y="-309" font-family="sans" font-size="10.00">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="1238" y="-298" font-family="sans" font-size="10.00">salmon_merge_on: numreads</text>
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<!-- 12&#45;&gt;3 -->
<g id="edge12" class="edge"><title>12&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1216.49,-287.697C1205.54,-278.881 1192.05,-268.032 1180.18,-258.474"/>
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<g id="node14" class="node"><title>13</title>
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<text text-anchor="middle" x="1958" y="-591.5" font-family="sans" font-size="10.00">star_rpm</text>
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<!-- 13&#45;&gt;3 -->
<g id="edge13" class="edge"><title>13&#45;&gt;3</title>
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<!-- 42 -->
<g id="node43" class="node"><title>42</title>
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<text text-anchor="middle" x="2149" y="-525" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
<text text-anchor="middle" x="2149" y="-514" font-family="sans" font-size="10.00">unique: Unique</text>
</g>
<!-- 13&#45;&gt;42 -->
<g id="edge71" class="edge"><title>13&#45;&gt;42</title>
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<!-- 45 -->
<g id="node46" class="node"><title>45</title>
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<text text-anchor="middle" x="1879" y="-525" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
<text text-anchor="middle" x="1879" y="-514" font-family="sans" font-size="10.00">unique: UniqueMultiple</text>
</g>
<!-- 13&#45;&gt;45 -->
<g id="edge74" class="edge"><title>13&#45;&gt;45</title>
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<!-- 14 -->
<g id="node15" class="node"><title>14</title>
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<text text-anchor="middle" x="1637" y="-591.5" font-family="sans" font-size="10.00">star_rpm</text>
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<!-- 14&#45;&gt;3 -->
<g id="edge14" class="edge"><title>14&#45;&gt;3</title>
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<!-- 44 -->
<g id="node45" class="node"><title>44</title>
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<text text-anchor="middle" x="1731" y="-525" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
<text text-anchor="middle" x="1731" y="-514" font-family="sans" font-size="10.00">unique: Unique</text>
</g>
<!-- 14&#45;&gt;44 -->
<g id="edge73" class="edge"><title>14&#45;&gt;44</title>
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<!-- 46 -->
<g id="node47" class="node"><title>46</title>
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<text text-anchor="middle" x="1583" y="-525" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
<text text-anchor="middle" x="1583" y="-514" font-family="sans" font-size="10.00">unique: UniqueMultiple</text>
</g>
<!-- 14&#45;&gt;46 -->
<g id="edge75" class="edge"><title>14&#45;&gt;46</title>
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<!-- 15 -->
<g id="node16" class="node"><title>15</title>
<path fill="none" stroke="#d6d856" stroke-width="2" d="M1780.5,-324C1780.5,-324 1703.5,-324 1703.5,-324 1697.5,-324 1691.5,-318 1691.5,-312 1691.5,-312 1691.5,-300 1691.5,-300 1691.5,-294 1697.5,-288 1703.5,-288 1703.5,-288 1780.5,-288 1780.5,-288 1786.5,-288 1792.5,-294 1792.5,-300 1792.5,-300 1792.5,-312 1792.5,-312 1792.5,-318 1786.5,-324 1780.5,-324"/>
<text text-anchor="middle" x="1742" y="-303.5" font-family="sans" font-size="10.00">alfa_concat_results</text>
<!-- 15&#45;&gt;3 -->
<g id="edge15" class="edge"><title>15&#45;&gt;3</title>
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<!-- 16 -->
<g id="node17" class="node"><title>16</title>
<path fill="none" stroke="#97d856" stroke-width="2" d="M1322,-830.5C1322,-830.5 1210,-830.5 1210,-830.5 1204,-830.5 1198,-824.5 1198,-818.5 1198,-818.5 1198,-806.5 1198,-806.5 1198,-800.5 1204,-794.5 1210,-794.5 1210,-794.5 1322,-794.5 1322,-794.5 1328,-794.5 1334,-800.5 1334,-806.5 1334,-806.5 1334,-818.5 1334,-818.5 1334,-824.5 1328,-830.5 1322,-830.5"/>
<text text-anchor="middle" x="1266" y="-810" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
<!-- 16&#45;&gt;6 -->
<g id="edge16" class="edge"><title>16&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1266,-794.151C1266,-767.022 1266,-712.909 1266,-667 1266,-667 1266,-667 1266,-593 1266,-549.905 1288.6,-504.262 1305.08,-476.697"/>
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<!-- 20 -->
<g id="node21" class="node"><title>20</title>
<path fill="none" stroke="#a7d856" stroke-width="2" d="M1108.5,-396C1108.5,-396 1005.5,-396 1005.5,-396 999.5,-396 993.5,-390 993.5,-384 993.5,-384 993.5,-372 993.5,-372 993.5,-366 999.5,-360 1005.5,-360 1005.5,-360 1108.5,-360 1108.5,-360 1114.5,-360 1120.5,-366 1120.5,-372 1120.5,-372 1120.5,-384 1120.5,-384 1120.5,-390 1114.5,-396 1108.5,-396"/>
<text text-anchor="middle" x="1057" y="-375.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
</g>
<!-- 16&#45;&gt;20 -->
<g id="edge40" class="edge"><title>16&#45;&gt;20</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1258.31,-794.093C1247.21,-767.328 1228,-714.21 1228,-667 1228,-667 1228,-667 1228,-593 1228,-552.553 1230.02,-538.557 1209,-504 1181.67,-459.06 1132.24,-422.965 1097.17,-401.329"/>
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<!-- 22 -->
<g id="node23" class="node"><title>22</title>
<path fill="none" stroke="#56d8b9" stroke-width="2" d="M1822.5,-756C1822.5,-756 1733.5,-756 1733.5,-756 1727.5,-756 1721.5,-750 1721.5,-744 1721.5,-744 1721.5,-732 1721.5,-732 1721.5,-726 1727.5,-720 1733.5,-720 1733.5,-720 1822.5,-720 1822.5,-720 1828.5,-720 1834.5,-726 1834.5,-732 1834.5,-732 1834.5,-744 1834.5,-744 1834.5,-750 1828.5,-756 1822.5,-756"/>
<text text-anchor="middle" x="1778" y="-735.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
<!-- 16&#45;&gt;22 -->
<g id="edge45" class="edge"><title>16&#45;&gt;22</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1334.25,-801.835C1432.73,-787.891 1613.53,-762.29 1711.19,-748.46"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1711.83,-751.905 1721.24,-747.037 1710.85,-744.974 1711.83,-751.905"/>
<!-- 17 -->
<g id="node18" class="node"><title>17</title>
<path fill="none" stroke="#d88556" stroke-width="2" d="M1188,-540C1188,-540 1104,-540 1104,-540 1098,-540 1092,-534 1092,-528 1092,-528 1092,-516 1092,-516 1092,-510 1098,-504 1104,-504 1104,-504 1188,-504 1188,-504 1194,-504 1200,-510 1200,-516 1200,-516 1200,-528 1200,-528 1200,-534 1194,-540 1188,-540"/>
<text text-anchor="middle" x="1146" y="-519.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
</g>
<!-- 17&#45;&gt;6 -->
<g id="edge17" class="edge"><title>17&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1189.05,-503.876C1213.33,-494.222 1243.84,-482.087 1269.51,-471.878"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1271.09,-475.016 1279.09,-468.068 1268.5,-468.512 1271.09,-475.016"/>
</g>
<!-- 17&#45;&gt;7 -->
<g id="edge19" class="edge"><title>17&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1091.82,-505.829C1088.85,-505.169 1085.89,-504.553 1083,-504 952.4,-479.05 798.675,-464.292 705.335,-456.922"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="705.339,-453.412 695.097,-456.124 704.795,-460.391 705.339,-453.412"/>
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<!-- 18 -->
<g id="node19" class="node"><title>18</title>
<path fill="none" stroke="#5663d8" stroke-width="2" d="M755,-830.5C755,-830.5 659,-830.5 659,-830.5 653,-830.5 647,-824.5 647,-818.5 647,-818.5 647,-806.5 647,-806.5 647,-800.5 653,-794.5 659,-794.5 659,-794.5 755,-794.5 755,-794.5 761,-794.5 767,-800.5 767,-806.5 767,-806.5 767,-818.5 767,-818.5 767,-824.5 761,-830.5 755,-830.5"/>
<text text-anchor="middle" x="707" y="-810" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
<!-- 18&#45;&gt;7 -->
<g id="edge18" class="edge"><title>18&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M692.155,-794.122C671.607,-768.23 637,-717.176 637,-667 637,-667 637,-667 637,-593 637,-552.931 630.244,-506.949 625.25,-478.433"/>
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<!-- 21 -->
<g id="node22" class="node"><title>21</title>
<path fill="none" stroke="#56d89a" stroke-width="2" d="M948.5,-396C948.5,-396 861.5,-396 861.5,-396 855.5,-396 849.5,-390 849.5,-384 849.5,-384 849.5,-372 849.5,-372 849.5,-366 855.5,-360 861.5,-360 861.5,-360 948.5,-360 948.5,-360 954.5,-360 960.5,-366 960.5,-372 960.5,-372 960.5,-384 960.5,-384 960.5,-390 954.5,-396 948.5,-396"/>
<text text-anchor="middle" x="905" y="-375.5" font-family="sans" font-size="10.00">quantification_salmon</text>
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</g>
<!-- 18&#45;&gt;21 -->
<g id="edge42" class="edge"><title>18&#45;&gt;21</title>
<path fill="none" stroke="grey" stroke-width="2" d="M707,-794.151C707,-767.022 707,-712.909 707,-667 707,-667 707,-667 707,-593 707,-552.553 703.64,-537.704 726,-504 757.754,-456.137 814.637,-421.138 855.772,-400.545"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="857.372,-403.659 864.817,-396.121 854.296,-397.371 857.372,-403.659"/>
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</g>
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<!-- 24 -->
<g id="node25" class="node"><title>24</title>
<path fill="none" stroke="#d8bc56" stroke-width="2" d="M1619.5,-756C1619.5,-756 1546.5,-756 1546.5,-756 1540.5,-756 1534.5,-750 1534.5,-744 1534.5,-744 1534.5,-732 1534.5,-732 1534.5,-726 1540.5,-720 1546.5,-720 1546.5,-720 1619.5,-720 1619.5,-720 1625.5,-720 1631.5,-726 1631.5,-732 1631.5,-732 1631.5,-744 1631.5,-744 1631.5,-750 1625.5,-756 1619.5,-756"/>
<text text-anchor="middle" x="1583" y="-735.5" font-family="sans" font-size="10.00">map_genome_star</text>
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<!-- 18&#45;&gt;24 -->
<g id="edge48" class="edge"><title>18&#45;&gt;24</title>
<path fill="none" stroke="grey" stroke-width="2" d="M767.211,-806.517C927.87,-793.22 1365.27,-757.02 1524.24,-743.863"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1524.63,-747.343 1534.31,-743.03 1524.05,-740.367 1524.63,-747.343"/>
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<!-- 19 -->
<g id="node20" class="node"><title>19</title>
<path fill="none" stroke="#5673d8" stroke-width="2" d="M1450,-540C1450,-540 1374,-540 1374,-540 1368,-540 1362,-534 1362,-528 1362,-528 1362,-516 1362,-516 1362,-510 1368,-504 1374,-504 1374,-504 1450,-504 1450,-504 1456,-504 1462,-510 1462,-516 1462,-516 1462,-528 1462,-528 1462,-534 1456,-540 1450,-540"/>
<text text-anchor="middle" x="1412" y="-519.5" font-family="sans" font-size="10.00">merge_TIN_scores</text>
</g>
<!-- 19&#45;&gt;8 -->
<g id="edge20" class="edge"><title>19&#45;&gt;8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1412.67,-503.815C1413.06,-493.443 1413.57,-479.963 1414,-468 1414.74,-447.272 1415.53,-423.828 1416.11,-406.206"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1419.61,-406.172 1416.45,-396.063 1412.62,-405.942 1419.61,-406.172"/>
</g>
<!-- 20&#45;&gt;9 -->
<g id="edge21" class="edge"><title>20&#45;&gt;9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M993.212,-363.003C942.204,-351.81 870.473,-336.069 816.041,-324.125"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="816.606,-320.666 806.088,-321.941 815.105,-327.503 816.606,-320.666"/>
</g>
<!-- 20&#45;&gt;10 -->
<g id="edge23" class="edge"><title>20&#45;&gt;10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1017.86,-359.876C995.987,-350.307 968.543,-338.3 945.338,-328.148"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="946.578,-324.87 936.013,-324.068 943.772,-331.283 946.578,-324.87"/>
</g>
<!-- 20&#45;&gt;11 -->
<g id="edge25" class="edge"><title>20&#45;&gt;11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1058.98,-359.697C1059.86,-351.983 1060.92,-342.712 1061.9,-334.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1065.39,-334.437 1063.05,-324.104 1058.43,-333.642 1065.39,-334.437"/>
</g>
<!-- 20&#45;&gt;12 -->
<g id="edge27" class="edge"><title>20&#45;&gt;12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1101.28,-359.876C1126.35,-350.179 1157.9,-337.98 1184.37,-327.743"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1185.8,-330.94 1193.87,-324.068 1183.28,-324.411 1185.8,-330.94"/>
</g>
<!-- 21&#45;&gt;9 -->
<g id="edge22" class="edge"><title>21&#45;&gt;9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M864.147,-359.876C841.216,-350.264 812.418,-338.193 788.13,-328.013"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="789.296,-324.706 778.72,-324.068 786.59,-331.162 789.296,-324.706"/>
</g>
<!-- 21&#45;&gt;10 -->
<g id="edge24" class="edge"><title>21&#45;&gt;10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M903.022,-359.697C902.141,-351.983 901.081,-342.712 900.099,-334.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="903.568,-333.642 898.955,-324.104 896.613,-334.437 903.568,-333.642"/>
</g>
<!-- 21&#45;&gt;11 -->
<g id="edge26" class="edge"><title>21&#45;&gt;11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M944.14,-359.876C966.013,-350.307 993.457,-338.3 1016.66,-328.148"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1018.23,-331.283 1025.99,-324.068 1015.42,-324.87 1018.23,-331.283"/>
</g>
<!-- 21&#45;&gt;12 -->
<g id="edge28" class="edge"><title>21&#45;&gt;12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M960.512,-365.182C968.722,-363.44 977.081,-361.671 985,-360 1040.05,-348.385 1101.85,-335.436 1150.6,-325.245"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1151.41,-328.652 1160.48,-323.179 1149.97,-321.8 1151.41,-328.652"/>
</g>
<!-- 22&#45;&gt;13 -->
<g id="edge29" class="edge"><title>22&#45;&gt;13</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1834.89,-734.427C1872.5,-729.541 1919.73,-716.711 1947,-684 1961.13,-667.049 1962.99,-641.583 1961.83,-622.229"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1965.31,-621.847 1960.93,-612.198 1958.33,-622.469 1965.31,-621.847"/>
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<!-- 23 -->
<g id="node24" class="node"><title>23</title>
<path fill="none" stroke="#56a2d8" stroke-width="2" d="M1926,-684C1926,-684 1776,-684 1776,-684 1770,-684 1764,-678 1764,-672 1764,-672 1764,-660 1764,-660 1764,-654 1770,-648 1776,-648 1776,-648 1926,-648 1926,-648 1932,-648 1938,-654 1938,-660 1938,-660 1938,-672 1938,-672 1938,-678 1932,-684 1926,-684"/>
<text text-anchor="middle" x="1851" y="-669" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1851" y="-658" font-family="sans" font-size="10.00">seqmode: paired_end</text>
</g>
<!-- 22&#45;&gt;23 -->
<g id="edge46" class="edge"><title>22&#45;&gt;23</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1796.04,-719.697C1805.06,-711.05 1816.12,-700.449 1825.94,-691.027"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1828.37,-693.552 1833.16,-684.104 1823.52,-688.499 1828.37,-693.552"/>
<!-- 31 -->
<g id="node32" class="node"><title>31</title>
<path fill="none" stroke="#56d86b" stroke-width="2" d="M1579,-612C1579,-612 1491,-612 1491,-612 1485,-612 1479,-606 1479,-600 1479,-600 1479,-588 1479,-588 1479,-582 1485,-576 1491,-576 1491,-576 1579,-576 1579,-576 1585,-576 1591,-582 1591,-588 1591,-588 1591,-600 1591,-600 1591,-606 1585,-612 1579,-612"/>
<text text-anchor="middle" x="1535" y="-591.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
</g>
<!-- 22&#45;&gt;31 -->
<g id="edge54" class="edge"><title>22&#45;&gt;31</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1762.74,-719.786C1744.5,-700.11 1712.25,-668.045 1679,-648 1654.93,-633.488 1626.23,-621.935 1600.82,-613.367"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1601.85,-610.021 1591.25,-610.229 1599.67,-616.672 1601.85,-610.021"/>
</g>
<!-- 23&#45;&gt;13 -->
<g id="edge30" class="edge"><title>23&#45;&gt;13</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1877.18,-647.876C1891.04,-638.808 1908.24,-627.552 1923.21,-617.759"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1925.27,-620.593 1931.72,-612.19 1921.44,-614.735 1925.27,-620.593"/>
</g>
<!-- 23&#45;&gt;31 -->
<g id="edge55" class="edge"><title>23&#45;&gt;31</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1766.32,-647.996C1717.81,-638.018 1655.86,-624.873 1601,-612 1600.9,-611.976 1600.8,-611.953 1600.7,-611.929"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1601.67,-608.563 1591.13,-609.633 1600.04,-615.37 1601.67,-608.563"/>
</g>
<!-- 24&#45;&gt;14 -->
<g id="edge31" class="edge"><title>24&#45;&gt;14</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1631.68,-722.094C1649.83,-713.907 1668.55,-701.707 1679,-684 1691.28,-663.202 1677.19,-638.237 1662.11,-620.048"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1664.44,-617.398 1655.21,-612.207 1659.19,-622.025 1664.44,-617.398"/>
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<!-- 25 -->
<g id="node26" class="node"><title>25</title>
<path fill="none" stroke="#56a2d8" stroke-width="2" d="M1658,-684C1658,-684 1508,-684 1508,-684 1502,-684 1496,-678 1496,-672 1496,-672 1496,-660 1496,-660 1496,-654 1502,-648 1508,-648 1508,-648 1658,-648 1658,-648 1664,-648 1670,-654 1670,-660 1670,-660 1670,-672 1670,-672 1670,-678 1664,-684 1658,-684"/>
<text text-anchor="middle" x="1583" y="-669" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1583" y="-658" font-family="sans" font-size="10.00">seqmode: single_end</text>
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<!-- 24&#45;&gt;25 -->
<g id="edge49" class="edge"><title>24&#45;&gt;25</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1583,-719.697C1583,-711.983 1583,-702.712 1583,-694.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1586.5,-694.104 1583,-684.104 1579.5,-694.104 1586.5,-694.104"/>
<!-- 32 -->
<g id="node33" class="node"><title>32</title>
<path fill="none" stroke="#56d86b" stroke-width="2" d="M1449,-612C1449,-612 1361,-612 1361,-612 1355,-612 1349,-606 1349,-600 1349,-600 1349,-588 1349,-588 1349,-582 1355,-576 1361,-576 1361,-576 1449,-576 1449,-576 1455,-576 1461,-582 1461,-588 1461,-588 1461,-600 1461,-600 1461,-606 1455,-612 1449,-612"/>
<text text-anchor="middle" x="1405" y="-591.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
</g>
<!-- 24&#45;&gt;32 -->
<g id="edge57" class="edge"><title>24&#45;&gt;32</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1534.42,-734.18C1466.9,-729.131 1350.04,-715.914 1324,-684 1313.88,-671.604 1316.39,-662.074 1324,-648 1330.82,-635.391 1342.09,-625.3 1354.08,-617.45"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1356.14,-620.294 1362.89,-612.126 1352.52,-614.303 1356.14,-620.294"/>
</g>
<!-- 25&#45;&gt;14 -->
<g id="edge32" class="edge"><title>25&#45;&gt;14</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1596.35,-647.697C1602.76,-639.389 1610.56,-629.277 1617.61,-620.141"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1620.47,-622.16 1623.81,-612.104 1614.93,-617.884 1620.47,-622.16"/>
</g>
<!-- 25&#45;&gt;32 -->
<g id="edge58" class="edge"><title>25&#45;&gt;32</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1539.46,-647.876C1514.8,-638.179 1483.78,-625.98 1457.75,-615.743"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1458.99,-612.471 1448.4,-612.068 1456.43,-618.985 1458.99,-612.471"/>
</g>
<!-- 26 -->
<g id="node27" class="node"><title>26</title>
<path fill="none" stroke="#88d856" stroke-width="2" d="M1905.5,-396C1905.5,-396 1824.5,-396 1824.5,-396 1818.5,-396 1812.5,-390 1812.5,-384 1812.5,-384 1812.5,-372 1812.5,-372 1812.5,-366 1818.5,-360 1824.5,-360 1824.5,-360 1905.5,-360 1905.5,-360 1911.5,-360 1917.5,-366 1917.5,-372 1917.5,-372 1917.5,-384 1917.5,-384 1917.5,-390 1911.5,-396 1905.5,-396"/>
<text text-anchor="middle" x="1865" y="-375.5" font-family="sans" font-size="10.00">alfa_qc_all_samples</text>
</g>
<!-- 26&#45;&gt;15 -->
<g id="edge33" class="edge"><title>26&#45;&gt;15</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1834.91,-359.876C1818.68,-350.639 1798.46,-339.131 1781.03,-329.212"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1782.63,-326.094 1772.2,-324.19 1779.16,-332.178 1782.63,-326.094"/>
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<!-- 27 -->
<g id="node28" class="node"><title>27</title>
<path fill="none" stroke="#88d856" stroke-width="2" d="M1782.5,-396C1782.5,-396 1701.5,-396 1701.5,-396 1695.5,-396 1689.5,-390 1689.5,-384 1689.5,-384 1689.5,-372 1689.5,-372 1689.5,-366 1695.5,-360 1701.5,-360 1701.5,-360 1782.5,-360 1782.5,-360 1788.5,-360 1794.5,-366 1794.5,-372 1794.5,-372 1794.5,-384 1794.5,-384 1794.5,-390 1788.5,-396 1782.5,-396"/>
<text text-anchor="middle" x="1742" y="-375.5" font-family="sans" font-size="10.00">alfa_qc_all_samples</text>
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</g>
<!-- 27&#45;&gt;15 -->
<g id="edge34" class="edge"><title>27&#45;&gt;15</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1742,-359.697C1742,-351.983 1742,-342.712 1742,-334.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1745.5,-334.104 1742,-324.104 1738.5,-334.104 1745.5,-334.104"/>
<!-- 28 -->
<g id="node29" class="node"><title>28</title>
<path fill="none" stroke="#d85656" stroke-width="2" d="M1400,-905C1400,-905 1132,-905 1132,-905 1126,-905 1120,-899 1120,-893 1120,-893 1120,-881 1120,-881 1120,-875 1126,-869 1132,-869 1132,-869 1400,-869 1400,-869 1406,-869 1412,-875 1412,-881 1412,-881 1412,-893 1412,-893 1412,-899 1406,-905 1400,-905"/>
<text text-anchor="middle" x="1266" y="-890" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1266" y="-879" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
</g>
<!-- 28&#45;&gt;16 -->
<g id="edge35" class="edge"><title>28&#45;&gt;16</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1266,-868.819C1266,-860.422 1266,-850.116 1266,-840.686"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1269.5,-840.558 1266,-830.558 1262.5,-840.558 1269.5,-840.558"/>
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</g>
<!-- 29 -->
<g id="node30" class="node"><title>29</title>
<path fill="none" stroke="#56d88a" stroke-width="2" d="M1106.5,-612C1106.5,-612 1005.5,-612 1005.5,-612 999.5,-612 993.5,-606 993.5,-600 993.5,-600 993.5,-588 993.5,-588 993.5,-582 999.5,-576 1005.5,-576 1005.5,-576 1106.5,-576 1106.5,-576 1112.5,-576 1118.5,-582 1118.5,-588 1118.5,-588 1118.5,-600 1118.5,-600 1118.5,-606 1112.5,-612 1106.5,-612"/>
<text text-anchor="middle" x="1056" y="-597" font-family="sans" font-size="10.00">extract_transcriptome</text>
<text text-anchor="middle" x="1056" y="-586" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
</g>
<!-- 29&#45;&gt;17 -->
<g id="edge36" class="edge"><title>29&#45;&gt;17</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1078.25,-575.697C1089.58,-566.881 1103.53,-556.032 1115.82,-546.474"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1118.26,-549.007 1124.01,-540.104 1113.97,-543.481 1118.26,-549.007"/>
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<!-- 40 -->
<g id="node41" class="node"><title>40</title>
<path fill="none" stroke="#d8a456" stroke-width="2" d="M1061.5,-540C1061.5,-540 890.5,-540 890.5,-540 884.5,-540 878.5,-534 878.5,-528 878.5,-528 878.5,-516 878.5,-516 878.5,-510 884.5,-504 890.5,-504 890.5,-504 1061.5,-504 1061.5,-504 1067.5,-504 1073.5,-510 1073.5,-516 1073.5,-516 1073.5,-528 1073.5,-528 1073.5,-534 1067.5,-540 1061.5,-540"/>
<text text-anchor="middle" x="976" y="-519.5" font-family="sans" font-size="10.00">concatenate_transcriptome_and_genome</text>
</g>
<!-- 29&#45;&gt;40 -->
<g id="edge70" class="edge"><title>29&#45;&gt;40</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1036.22,-575.697C1026.25,-566.965 1013.99,-556.24 1003.14,-546.75"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1005.38,-544.055 995.548,-540.104 1000.77,-549.323 1005.38,-544.055"/>
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<!-- 30 -->
<g id="node31" class="node"><title>30</title>
<path fill="none" stroke="#56b1d8" stroke-width="2" d="M847,-905C847,-905 567,-905 567,-905 561,-905 555,-899 555,-893 555,-893 555,-881 555,-881 555,-875 561,-869 567,-869 567,-869 847,-869 847,-869 853,-869 859,-875 859,-881 859,-881 859,-893 859,-893 859,-899 853,-905 847,-905"/>
<text text-anchor="middle" x="707" y="-890" font-family="sans" font-size="10.00">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="707" y="-879" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
</g>
<!-- 30&#45;&gt;18 -->
<g id="edge37" class="edge"><title>30&#45;&gt;18</title>
<path fill="none" stroke="grey" stroke-width="2" d="M707,-868.819C707,-860.422 707,-850.116 707,-840.686"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="710.5,-840.558 707,-830.558 703.5,-840.558 710.5,-840.558"/>
</g>
<!-- 31&#45;&gt;19 -->
<g id="edge38" class="edge"><title>31&#45;&gt;19</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1504.91,-575.876C1488.68,-566.639 1468.46,-555.131 1451.03,-545.212"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1452.63,-542.094 1442.2,-540.19 1449.16,-548.178 1452.63,-542.094"/>
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</g>
<!-- 32&#45;&gt;19 -->
<g id="edge39" class="edge"><title>32&#45;&gt;19</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1406.73,-575.697C1407.5,-567.983 1408.43,-558.712 1409.29,-550.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1412.78,-550.403 1410.29,-540.104 1405.81,-549.706 1412.78,-550.403"/>
</g>
<!-- 33 -->
<g id="node34" class="node"><title>33</title>
<path fill="none" stroke="#56d8c9" stroke-width="2" d="M979.5,-468C979.5,-468 894.5,-468 894.5,-468 888.5,-468 882.5,-462 882.5,-456 882.5,-456 882.5,-444 882.5,-444 882.5,-438 888.5,-432 894.5,-432 894.5,-432 979.5,-432 979.5,-432 985.5,-432 991.5,-438 991.5,-444 991.5,-444 991.5,-456 991.5,-456 991.5,-462 985.5,-468 979.5,-468"/>
<text text-anchor="middle" x="937" y="-447.5" font-family="sans" font-size="10.00">create_index_salmon</text>
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</g>
<!-- 33&#45;&gt;20 -->
<g id="edge41" class="edge"><title>33&#45;&gt;20</title>
<path fill="none" stroke="grey" stroke-width="2" d="M966.355,-431.876C982.045,-422.724 1001.56,-411.342 1018.45,-401.485"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1020.66,-404.252 1027.53,-396.19 1017.13,-398.205 1020.66,-404.252"/>
<!-- 33&#45;&gt;21 -->
<g id="edge43" class="edge"><title>33&#45;&gt;21</title>
<path fill="none" stroke="grey" stroke-width="2" d="M929.09,-431.697C925.447,-423.728 921.046,-414.1 917.006,-405.264"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="920.16,-403.744 912.819,-396.104 913.794,-406.654 920.16,-403.744"/>
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</g>
<!-- 34 -->
<g id="node35" class="node"><title>34</title>
<path fill="none" stroke="#70d856" stroke-width="2" d="M1828.5,-833C1828.5,-833 1727.5,-833 1727.5,-833 1721.5,-833 1715.5,-827 1715.5,-821 1715.5,-821 1715.5,-804 1715.5,-804 1715.5,-798 1721.5,-792 1727.5,-792 1727.5,-792 1828.5,-792 1828.5,-792 1834.5,-792 1840.5,-798 1840.5,-804 1840.5,-804 1840.5,-821 1840.5,-821 1840.5,-827 1834.5,-833 1828.5,-833"/>
<text text-anchor="middle" x="1778" y="-821" font-family="sans" font-size="10.00">create_index_star</text>
<text text-anchor="middle" x="1778" y="-810" font-family="sans" font-size="10.00">index_size: 75</text>
<text text-anchor="middle" x="1778" y="-799" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
</g>
<!-- 34&#45;&gt;22 -->
<g id="edge44" class="edge"><title>34&#45;&gt;22</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1778,-791.689C1778,-783.907 1778,-774.842 1778,-766.447"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1781.5,-766.319 1778,-756.319 1774.5,-766.32 1781.5,-766.319"/>
</g>
<!-- 34&#45;&gt;24 -->
<g id="edge47" class="edge"><title>34&#45;&gt;24</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1725.49,-791.976C1698.54,-781.959 1665.73,-769.76 1638.39,-759.594"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1639.56,-756.294 1628.96,-756.09 1637.12,-762.855 1639.56,-756.294"/>
</g>
<!-- 43 -->
<g id="node44" class="node"><title>43</title>
<path fill="none" stroke="#5682d8" stroke-width="2" d="M2054,-540C2054,-540 1974,-540 1974,-540 1968,-540 1962,-534 1962,-528 1962,-528 1962,-516 1962,-516 1962,-510 1968,-504 1974,-504 1974,-504 2054,-504 2054,-504 2060,-504 2066,-510 2066,-516 2066,-516 2066,-528 2066,-528 2066,-534 2060,-540 2054,-540"/>
<text text-anchor="middle" x="2014" y="-519.5" font-family="sans" font-size="10.00">generate_alfa_index</text>
</g>
<!-- 34&#45;&gt;43 -->
<g id="edge72" class="edge"><title>34&#45;&gt;43</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1821.52,-791.833C1863.92,-770.678 1927.59,-733.322 1967,-684 1998.41,-644.69 2008.83,-585.094 2012.29,-550.508"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="2015.8,-550.48 2013.18,-540.215 2008.83,-549.874 2015.8,-550.48"/>
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</g>
<!-- 35 -->
<g id="node36" class="node"><title>35</title>
<path fill="none" stroke="#d8cb56" stroke-width="2" d="M2029,-468C2029,-468 1999,-468 1999,-468 1993,-468 1987,-462 1987,-456 1987,-456 1987,-444 1987,-444 1987,-438 1993,-432 1999,-432 1999,-432 2029,-432 2029,-432 2035,-432 2041,-438 2041,-444 2041,-444 2041,-456 2041,-456 2041,-462 2035,-468 2029,-468"/>
<text text-anchor="middle" x="2014" y="-447.5" font-family="sans" font-size="10.00">alfa_qc</text>
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</g>
<!-- 35&#45;&gt;26 -->
<g id="edge50" class="edge"><title>35&#45;&gt;26</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1986.67,-436.161C1965.44,-426.186 1935.53,-412.133 1910.67,-400.456"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1911.96,-397.196 1901.42,-396.111 1908.99,-403.531 1911.96,-397.196"/>
<!-- 36 -->
<g id="node37" class="node"><title>36</title>
<path fill="none" stroke="#d8cb56" stroke-width="2" d="M1854,-468C1854,-468 1824,-468 1824,-468 1818,-468 1812,-462 1812,-456 1812,-456 1812,-444 1812,-444 1812,-438 1818,-432 1824,-432 1824,-432 1854,-432 1854,-432 1860,-432 1866,-438 1866,-444 1866,-444 1866,-456 1866,-456 1866,-462 1860,-468 1854,-468"/>
<text text-anchor="middle" x="1839" y="-447.5" font-family="sans" font-size="10.00">alfa_qc</text>
<!-- 36&#45;&gt;26 -->
<g id="edge51" class="edge"><title>36&#45;&gt;26</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1845.43,-431.697C1848.36,-423.813 1851.89,-414.304 1855.14,-405.546"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1858.45,-406.697 1858.65,-396.104 1851.88,-404.26 1858.45,-406.697"/>
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</g>
<!-- 37 -->
<g id="node38" class="node"><title>37</title>
<path fill="none" stroke="#d8cb56" stroke-width="2" d="M1926,-468C1926,-468 1896,-468 1896,-468 1890,-468 1884,-462 1884,-456 1884,-456 1884,-444 1884,-444 1884,-438 1890,-432 1896,-432 1896,-432 1926,-432 1926,-432 1932,-432 1938,-438 1938,-444 1938,-444 1938,-456 1938,-456 1938,-462 1932,-468 1926,-468"/>
<text text-anchor="middle" x="1911" y="-447.5" font-family="sans" font-size="10.00">alfa_qc</text>
</g>
<!-- 37&#45;&gt;27 -->
<g id="edge52" class="edge"><title>37&#45;&gt;27</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1883.96,-436.009C1880.95,-434.629 1877.92,-433.268 1875,-432 1849.34,-420.843 1820.54,-409.251 1796.31,-399.763"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1797.51,-396.475 1786.92,-396.102 1794.97,-402.997 1797.51,-396.475"/>
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</g>
<!-- 38 -->
<g id="node39" class="node"><title>38</title>
<path fill="none" stroke="#d8cb56" stroke-width="2" d="M1757,-468C1757,-468 1727,-468 1727,-468 1721,-468 1715,-462 1715,-456 1715,-456 1715,-444 1715,-444 1715,-438 1721,-432 1727,-432 1727,-432 1757,-432 1757,-432 1763,-432 1769,-438 1769,-444 1769,-444 1769,-456 1769,-456 1769,-462 1763,-468 1757,-468"/>
<text text-anchor="middle" x="1742" y="-447.5" font-family="sans" font-size="10.00">alfa_qc</text>
</g>
<!-- 38&#45;&gt;27 -->
<g id="edge53" class="edge"><title>38&#45;&gt;27</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1742,-431.697C1742,-423.983 1742,-414.712 1742,-406.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1745.5,-406.104 1742,-396.104 1738.5,-406.104 1745.5,-406.104"/>
</g>
<!-- 39 -->
<g id="node40" class="node"><title>39</title>
<path fill="none" stroke="#5692d8" stroke-width="2" d="M1465.5,-684C1465.5,-684 1344.5,-684 1344.5,-684 1338.5,-684 1332.5,-678 1332.5,-672 1332.5,-672 1332.5,-660 1332.5,-660 1332.5,-654 1338.5,-648 1344.5,-648 1344.5,-648 1465.5,-648 1465.5,-648 1471.5,-648 1477.5,-654 1477.5,-660 1477.5,-660 1477.5,-672 1477.5,-672 1477.5,-678 1471.5,-684 1465.5,-684"/>
<text text-anchor="middle" x="1405" y="-663.5" font-family="sans" font-size="10.00">extract_transcripts_as_bed12</text>
</g>
<!-- 39&#45;&gt;31 -->
<g id="edge56" class="edge"><title>39&#45;&gt;31</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1436.8,-647.876C1454.11,-638.554 1475.72,-626.919 1494.26,-616.939"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1495.93,-620.012 1503.08,-612.19 1492.61,-613.849 1495.93,-620.012"/>
</g>
<!-- 39&#45;&gt;32 -->
<g id="edge59" class="edge"><title>39&#45;&gt;32</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1405,-647.697C1405,-639.983 1405,-630.712 1405,-622.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1408.5,-622.104 1405,-612.104 1401.5,-622.104 1408.5,-622.104"/>
</g>
<!-- 40&#45;&gt;33 -->
<g id="edge60" class="edge"><title>40&#45;&gt;33</title>
<path fill="none" stroke="grey" stroke-width="2" d="M966.36,-503.697C961.873,-495.644 956.441,-485.894 951.476,-476.982"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="954.454,-475.137 946.53,-468.104 948.339,-478.544 954.454,-475.137"/>
</g>
<!-- 41 -->
<g id="node42" class="node"><title>41</title>
<path fill="none" stroke="#d8ac56" stroke-width="2" d="M848.5,-540C848.5,-540 747.5,-540 747.5,-540 741.5,-540 735.5,-534 735.5,-528 735.5,-528 735.5,-516 735.5,-516 735.5,-510 741.5,-504 747.5,-504 747.5,-504 848.5,-504 848.5,-504 854.5,-504 860.5,-510 860.5,-516 860.5,-516 860.5,-528 860.5,-528 860.5,-534 854.5,-540 848.5,-540"/>
<text text-anchor="middle" x="798" y="-525" font-family="sans" font-size="10.00">extract_decoys_salmon</text>
<text text-anchor="middle" x="798" y="-514" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
</g>
<!-- 41&#45;&gt;33 -->
<g id="edge61" class="edge"><title>41&#45;&gt;33</title>
<path fill="none" stroke="grey" stroke-width="2" d="M832.003,-503.876C850.598,-494.512 873.827,-482.814 893.706,-472.803"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="895.509,-475.814 902.866,-468.19 892.36,-469.562 895.509,-475.814"/>
</g>
<!-- 42&#45;&gt;35 -->
<g id="edge62" class="edge"><title>42&#45;&gt;35</title>
<path fill="none" stroke="grey" stroke-width="2" d="M2115.98,-503.876C2096.07,-493.557 2070.71,-480.403 2050.25,-469.797"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="2051.73,-466.619 2041.24,-465.123 2048.5,-472.833 2051.73,-466.619"/>
</g>
<!-- 43&#45;&gt;35 -->
<g id="edge63" class="edge"><title>43&#45;&gt;35</title>
<path fill="none" stroke="grey" stroke-width="2" d="M2014,-503.697C2014,-495.983 2014,-486.712 2014,-478.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="2017.5,-478.104 2014,-468.104 2010.5,-478.104 2017.5,-478.104"/>
</g>
<!-- 43&#45;&gt;36 -->
<g id="edge65" class="edge"><title>43&#45;&gt;36</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1966.67,-503.982C1941.84,-494.818 1910.78,-482.99 1875.56,-468.1"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1876.6,-464.736 1866.03,-464.035 1873.85,-471.176 1876.6,-464.736"/>
</g>
<!-- 43&#45;&gt;37 -->
<g id="edge67" class="edge"><title>43&#45;&gt;37</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1988.8,-503.876C1975.59,-494.893 1959.21,-483.763 1944.89,-474.034"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1946.53,-470.916 1936.29,-468.19 1942.6,-476.705 1946.53,-470.916"/>
</g>
<!-- 43&#45;&gt;38 -->
<g id="edge69" class="edge"><title>43&#45;&gt;38</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1961.79,-506.316C1958.82,-505.522 1955.87,-504.745 1953,-504 1886.63,-486.794 1869.37,-485.206 1803,-468 1795.22,-465.982 1786.9,-463.73 1779,-461.543"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1779.85,-458.145 1769.27,-458.828 1777.96,-464.887 1779.85,-458.145"/>
</g>
<!-- 44&#45;&gt;36 -->
<g id="edge64" class="edge"><title>44&#45;&gt;36</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1757.42,-503.876C1771.41,-494.808 1788.78,-483.552 1803.89,-473.759"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1805.99,-476.566 1812.48,-468.19 1802.18,-470.692 1805.99,-476.566"/>
</g>
<!-- 45&#45;&gt;37 -->
<g id="edge66" class="edge"><title>45&#45;&gt;37</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1886.91,-503.697C1890.55,-495.728 1894.95,-486.1 1898.99,-477.264"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1902.21,-478.654 1903.18,-468.104 1895.84,-475.744 1902.21,-478.654"/>
</g>
<!-- 46&#45;&gt;38 -->
<g id="edge68" class="edge"><title>46&#45;&gt;38</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1621.9,-503.876C1647.49,-492.607 1680.77,-477.957 1705.8,-466.936"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1707.22,-470.138 1714.96,-462.905 1704.4,-463.731 1707.22,-470.138"/>
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</g>
</g>
</svg>