rule_graph.svg

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
 "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
<!-- Generated by graphviz version 2.40.1 (20161225.0304)
 -->
<!-- Title: snakemake_dag Pages: 1 -->
<svg width="1180pt" height="404pt"
 viewBox="0.00 0.00 1180.00 404.00" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 400)">
<title>snakemake_dag</title>
<polygon fill="#ffffff" stroke="transparent" points="-4,4 -4,-400 1176,-400 1176,4 -4,4"/>
<!-- 0 -->
<g id="node1" class="node">
<title>0</title>
<path fill="none" stroke="#5682d8" stroke-width="2" d="M312,-36C312,-36 282,-36 282,-36 276,-36 270,-30 270,-24 270,-24 270,-12 270,-12 270,-6 276,0 282,0 282,0 312,0 312,0 318,0 324,-6 324,-12 324,-12 324,-24 324,-24 324,-30 318,-36 312,-36"/>
<text text-anchor="middle" x="297" y="-15.5" font-family="sans" font-size="10.00" fill="#000000">finish</text>
</g>
<!-- 1 -->
<g id="node2" class="node">
<title>1</title>
<path fill="none" stroke="#56d8d0" stroke-width="2" d="M108.5,-108C108.5,-108 73.5,-108 73.5,-108 67.5,-108 61.5,-102 61.5,-96 61.5,-96 61.5,-84 61.5,-84 61.5,-78 67.5,-72 73.5,-72 73.5,-72 108.5,-72 108.5,-72 114.5,-72 120.5,-78 120.5,-84 120.5,-84 120.5,-96 120.5,-96 120.5,-102 114.5,-108 108.5,-108"/>
<text text-anchor="middle" x="91" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">pe_fastqc</text>
</g>
<!-- 1&#45;&gt;0 -->
<g id="edge1" class="edge">
<title>1&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M120.6523,-75.8697C123.7863,-74.51 126.9439,-73.1944 130,-72 173.8524,-54.8612 225.6071,-38.7391 259.7492,-28.6502"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="261.1396,-31.8899 269.7514,-25.7183 259.1706,-25.1726 261.1396,-31.8899"/>
</g>
<!-- 2 -->
<g id="node3" class="node">
<title>2</title>
<path fill="none" stroke="#566bd8" stroke-width="2" d="M181,-108C181,-108 151,-108 151,-108 145,-108 139,-102 139,-96 139,-96 139,-84 139,-84 139,-78 145,-72 151,-72 151,-72 181,-72 181,-72 187,-72 193,-78 193,-84 193,-84 193,-96 193,-96 193,-102 187,-108 181,-108"/>
<text text-anchor="middle" x="166" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">fastqc</text>
</g>
<!-- 2&#45;&gt;0 -->
<g id="edge8" class="edge">
<title>2&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M193.1433,-75.0816C212.8158,-64.2692 239.6157,-49.5395 261.0636,-37.7513"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="262.8137,-40.7833 269.8915,-32.8993 259.4421,-34.6488 262.8137,-40.7833"/>
</g>
<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
<path fill="none" stroke="#d85656" stroke-width="2" d="M467.5,-180C467.5,-180 364.5,-180 364.5,-180 358.5,-180 352.5,-174 352.5,-168 352.5,-168 352.5,-156 352.5,-156 352.5,-150 358.5,-144 364.5,-144 364.5,-144 467.5,-144 467.5,-144 473.5,-144 479.5,-150 479.5,-156 479.5,-156 479.5,-168 479.5,-168 479.5,-174 473.5,-180 467.5,-180"/>
<text text-anchor="middle" x="416" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">pe_quantification_salmon</text>
</g>
<!-- 3&#45;&gt;0 -->
<g id="edge3" class="edge">
<title>3&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M363.0147,-143.8877C345.6552,-135.5008 327.8125,-123.8039 316,-108 302.7514,-90.2747 298.2787,-65.3679 296.9629,-46.2482"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="300.4498,-45.8685 296.5157,-36.0312 293.4565,-46.1747 300.4498,-45.8685"/>
</g>
<!-- 8 -->
<g id="node9" class="node">
<title>8</title>
<path fill="none" stroke="#56d87b" stroke-width="2" d="M449,-108C449,-108 337,-108 337,-108 331,-108 325,-102 325,-96 325,-96 325,-84 325,-84 325,-78 331,-72 337,-72 337,-72 449,-72 449,-72 455,-72 461,-78 461,-84 461,-84 461,-96 461,-96 461,-102 455,-108 449,-108"/>
<text text-anchor="middle" x="393" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_genes</text>
</g>
<!-- 3&#45;&gt;8 -->
<g id="edge21" class="edge">
<title>3&#45;&gt;8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M410.1961,-143.8314C407.7092,-136.0463 404.7469,-126.7729 401.9875,-118.1347"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="405.2591,-116.874 398.882,-108.4133 398.591,-119.0041 405.2591,-116.874"/>
</g>
<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
<path fill="none" stroke="#d8c356" stroke-width="2" d="M622.5,-108C622.5,-108 491.5,-108 491.5,-108 485.5,-108 479.5,-102 479.5,-96 479.5,-96 479.5,-84 479.5,-84 479.5,-78 485.5,-72 491.5,-72 491.5,-72 622.5,-72 622.5,-72 628.5,-72 634.5,-78 634.5,-84 634.5,-84 634.5,-96 634.5,-96 634.5,-102 628.5,-108 622.5,-108"/>
<text text-anchor="middle" x="557" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_transcripts</text>
</g>
<!-- 3&#45;&gt;9 -->
<g id="edge23" class="edge">
<title>3&#45;&gt;9</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M451.5803,-143.8314C470.0325,-134.4089 492.7545,-122.8062 512.373,-112.7883"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="514.1168,-115.8278 521.4311,-108.1628 510.9333,-109.5935 514.1168,-115.8278"/>
</g>
<!-- 4 -->
<g id="node5" class="node">
<title>4</title>
<path fill="none" stroke="#78d856" stroke-width="2" d="M596.5,-180C596.5,-180 509.5,-180 509.5,-180 503.5,-180 497.5,-174 497.5,-168 497.5,-168 497.5,-156 497.5,-156 497.5,-150 503.5,-144 509.5,-144 509.5,-144 596.5,-144 596.5,-144 602.5,-144 608.5,-150 608.5,-156 608.5,-156 608.5,-168 608.5,-168 608.5,-174 602.5,-180 596.5,-180"/>
<text text-anchor="middle" x="553" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">quantification_salmon</text>
</g>
<!-- 4&#45;&gt;0 -->
<g id="edge9" class="edge">
<title>4&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M602.5287,-143.9463C618.3254,-135.5649 634.0222,-123.8565 643,-108 650.8832,-94.0768 653.4049,-84.1547 643,-72 623.0507,-48.6958 419.4899,-28.5724 334.2384,-21.0998"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="334.4751,-17.6073 324.2105,-20.2315 333.8712,-24.5812 334.4751,-17.6073"/>
</g>
<!-- 4&#45;&gt;8 -->
<g id="edge22" class="edge">
<title>4&#45;&gt;8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M512.6252,-143.8314C491.3213,-134.2446 465.0017,-122.4008 442.4789,-112.2655"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="443.6399,-108.95 433.0844,-108.038 440.7674,-115.3334 443.6399,-108.95"/>
</g>
<!-- 4&#45;&gt;9 -->
<g id="edge24" class="edge">
<title>4&#45;&gt;9</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M554.0094,-143.8314C554.4372,-136.131 554.9459,-126.9743 555.4213,-118.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="558.9169,-118.592 555.977,-108.4133 551.9276,-118.2037 558.9169,-118.592"/>
</g>
<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
<path fill="none" stroke="#d6d856" stroke-width="2" d="M154,-180C154,-180 12,-180 12,-180 6,-180 0,-174 0,-168 0,-168 0,-156 0,-156 0,-150 6,-144 12,-144 12,-144 154,-144 154,-144 160,-144 166,-150 166,-156 166,-156 166,-168 166,-168 166,-174 160,-180 154,-180"/>
<text text-anchor="middle" x="83" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">pe_genome_quantification_kallisto</text>
</g>
<!-- 5&#45;&gt;0 -->
<g id="edge4" class="edge">
<title>5&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M132.4149,-143.9133C154.5952,-134.7238 180.5404,-122.4364 202,-108 229.3371,-89.6096 256.1879,-63.1737 274.3309,-43.709"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="277.1307,-45.8345 281.3126,-36.0999 271.9729,-41.102 277.1307,-45.8345"/>
</g>
<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
<path fill="none" stroke="#d88556" stroke-width="2" d="M322,-180C322,-180 196,-180 196,-180 190,-180 184,-174 184,-168 184,-168 184,-156 184,-156 184,-150 190,-144 196,-144 196,-144 322,-144 322,-144 328,-144 334,-150 334,-156 334,-156 334,-168 334,-168 334,-174 328,-180 322,-180"/>
<text text-anchor="middle" x="259" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">genome_quantification_kallisto</text>
</g>
<!-- 6&#45;&gt;0 -->
<g id="edge7" class="edge">
<title>6&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M263.8127,-143.7623C270.3227,-119.0928 281.9953,-74.8598 289.6182,-45.9731"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="293.0589,-46.6517 292.2264,-36.0896 286.2906,-44.8656 293.0589,-46.6517"/>
</g>
<!-- 7 -->
<g id="node8" class="node">
<title>7</title>
<path fill="none" stroke="#56b1d8" stroke-width="2" d="M860,-108C860,-108 772,-108 772,-108 766,-108 760,-102 760,-96 760,-96 760,-84 760,-84 760,-78 766,-72 772,-72 772,-72 860,-72 860,-72 866,-72 872,-78 872,-84 872,-84 872,-96 872,-96 872,-102 866,-108 860,-108"/>
<text text-anchor="middle" x="816" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">calculate_TIN_scores</text>
</g>
<!-- 7&#45;&gt;0 -->
<g id="edge2" class="edge">
<title>7&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M759.9648,-82.2263C653.3136,-67.4308 423.786,-35.5888 334.0397,-23.1385"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="334.4393,-19.6605 324.0532,-21.753 333.4774,-26.5941 334.4393,-19.6605"/>
</g>
<!-- 8&#45;&gt;0 -->
<g id="edge5" class="edge">
<title>8&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M368.7751,-71.8314C356.8372,-62.8779 342.2744,-51.9558 329.394,-42.2955"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="331.3171,-39.3629 321.2171,-36.1628 327.1171,-44.9629 331.3171,-39.3629"/>
</g>
<!-- 9&#45;&gt;0 -->
<g id="edge6" class="edge">
<title>9&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M491.7266,-71.9243C441.9434,-58.1382 375.1578,-39.6437 334.1509,-28.2879"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="334.8783,-24.8577 324.3068,-25.5619 333.01,-31.6038 334.8783,-24.8577"/>
</g>
<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
<path fill="none" stroke="#56d8b9" stroke-width="2" d="M349,-324C349,-324 237,-324 237,-324 231,-324 225,-318 225,-312 225,-312 225,-300 225,-300 225,-294 231,-288 237,-288 237,-288 349,-288 349,-288 355,-288 361,-294 361,-300 361,-300 361,-312 361,-312 361,-318 355,-324 349,-324"/>
<text text-anchor="middle" x="293" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">pe_remove_polya_cutadapt</text>
</g>
<!-- 10&#45;&gt;3 -->
<g id="edge10" class="edge">
<title>10&#45;&gt;3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M308.578,-287.7623C330.2044,-262.4436 369.4324,-216.5182 394.0265,-187.7251"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="396.7149,-189.9666 400.5485,-180.0896 391.3922,-185.4202 396.7149,-189.9666"/>
</g>
<!-- 10&#45;&gt;5 -->
<g id="edge14" class="edge">
<title>10&#45;&gt;5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M253.7114,-287.9038C234.0069,-278.211 210.1177,-265.5019 190,-252 160.8684,-232.4485 130.5241,-206.2856 109.6225,-187.209"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="111.8218,-184.4762 102.0963,-180.2732 107.0781,-189.6238 111.8218,-184.4762"/>
</g>
<!-- 20 -->
<g id="node21" class="node">
<title>20</title>
<path fill="none" stroke="#d89c56" stroke-width="2" d="M780.5,-252C780.5,-252 691.5,-252 691.5,-252 685.5,-252 679.5,-246 679.5,-240 679.5,-240 679.5,-228 679.5,-228 679.5,-222 685.5,-216 691.5,-216 691.5,-216 780.5,-216 780.5,-216 786.5,-216 792.5,-222 792.5,-228 792.5,-228 792.5,-240 792.5,-240 792.5,-246 786.5,-252 780.5,-252"/>
<text text-anchor="middle" x="736" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">pe_map_genome_star</text>
</g>
<!-- 10&#45;&gt;20 -->
<g id="edge31" class="edge">
<title>10&#45;&gt;20</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M361.3709,-289.7061C364.2822,-289.1107 367.1679,-288.539 370,-288 473.953,-268.2165 595.6917,-251.5316 669.2698,-242.1508"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="669.8451,-245.6059 679.3255,-240.876 668.9647,-238.6615 669.8451,-245.6059"/>
</g>
<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
<path fill="none" stroke="#56d8a2" stroke-width="2" d="M498.5,-252C498.5,-252 413.5,-252 413.5,-252 407.5,-252 401.5,-246 401.5,-240 401.5,-240 401.5,-228 401.5,-228 401.5,-222 407.5,-216 413.5,-216 413.5,-216 498.5,-216 498.5,-216 504.5,-216 510.5,-222 510.5,-228 510.5,-228 510.5,-240 510.5,-240 510.5,-246 504.5,-252 498.5,-252"/>
<text text-anchor="middle" x="456" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">create_index_salmon</text>
</g>
<!-- 11&#45;&gt;3 -->
<g id="edge11" class="edge">
<title>11&#45;&gt;3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M445.9063,-215.8314C441.4403,-207.7925 436.0925,-198.1666 431.1621,-189.2918"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="434.1456,-187.4551 426.2296,-180.4133 428.0265,-190.8546 434.1456,-187.4551"/>
</g>
<!-- 11&#45;&gt;4 -->
<g id="edge12" class="edge">
<title>11&#45;&gt;4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M480.4772,-215.8314C492.5395,-206.8779 507.254,-195.9558 520.2686,-186.2955"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="522.587,-188.9335 528.5306,-180.1628 518.4148,-183.3127 522.587,-188.9335"/>
</g>
<!-- 12 -->
<g id="node13" class="node">
<title>12</title>
<path fill="none" stroke="#56d863" stroke-width="2" d="M617,-324C617,-324 521,-324 521,-324 515,-324 509,-318 509,-312 509,-312 509,-300 509,-300 509,-294 515,-288 521,-288 521,-288 617,-288 617,-288 623,-288 629,-294 629,-300 629,-300 629,-312 629,-312 629,-318 623,-324 617,-324"/>
<text text-anchor="middle" x="569" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">remove_polya_cutadapt</text>
</g>
<!-- 12&#45;&gt;4 -->
<g id="edge13" class="edge">
<title>12&#45;&gt;4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M566.9736,-287.7623C564.2446,-263.201 559.3608,-219.2474 556.1505,-190.3541"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="559.593,-189.6419 555.01,-180.0896 552.6358,-190.415 559.593,-189.6419"/>
</g>
<!-- 12&#45;&gt;6 -->
<g id="edge17" class="edge">
<title>12&#45;&gt;6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M508.9935,-289.7599C466.2685,-277.8079 412.8739,-261.968 392,-252 354.315,-234.0041 315.1964,-206.2553 289.2236,-186.3277"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="291.3169,-183.5219 281.2713,-180.1548 287.0246,-189.0515 291.3169,-183.5219"/>
</g>
<!-- 21 -->
<g id="node22" class="node">
<title>21</title>
<path fill="none" stroke="#56d892" stroke-width="2" d="M895.5,-252C895.5,-252 822.5,-252 822.5,-252 816.5,-252 810.5,-246 810.5,-240 810.5,-240 810.5,-228 810.5,-228 810.5,-222 816.5,-216 822.5,-216 822.5,-216 895.5,-216 895.5,-216 901.5,-216 907.5,-222 907.5,-228 907.5,-228 907.5,-240 907.5,-240 907.5,-246 901.5,-252 895.5,-252"/>
<text text-anchor="middle" x="859" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">map_genome_star</text>
</g>
<!-- 12&#45;&gt;21 -->
<g id="edge34" class="edge">
<title>12&#45;&gt;21</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M629.1827,-293.4061C674.1156,-283.6937 737.1966,-269.4079 800.5071,-252.3215"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="801.5267,-255.6714 810.2566,-249.6682 799.6884,-248.917 801.5267,-255.6714"/>
</g>
<!-- 13 -->
<g id="node14" class="node">
<title>13</title>
<path fill="none" stroke="#d8b456" stroke-width="2" d="M295,-252C295,-252 211,-252 211,-252 205,-252 199,-246 199,-240 199,-240 199,-228 199,-228 199,-222 205,-216 211,-216 211,-216 295,-216 295,-216 301,-216 307,-222 307,-228 307,-228 307,-240 307,-240 307,-246 301,-252 295,-252"/>
<text text-anchor="middle" x="253" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">create_index_kallisto</text>
</g>
<!-- 13&#45;&gt;5 -->
<g id="edge15" class="edge">
<title>13&#45;&gt;5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M210.1018,-215.8314C187.2643,-206.159 159.002,-194.1891 134.9313,-183.9944"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="136.1629,-180.7151 125.5897,-180.038 133.4329,-187.1608 136.1629,-180.7151"/>
</g>
<!-- 13&#45;&gt;6 -->
<g id="edge16" class="edge">
<title>13&#45;&gt;6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M254.5141,-215.8314C255.1558,-208.131 255.9188,-198.9743 256.6319,-190.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="260.1229,-190.6694 257.4656,-180.4133 253.1471,-190.088 260.1229,-190.6694"/>
</g>
<!-- 14 -->
<g id="node15" class="node">
<title>14</title>
<path fill="none" stroke="#569ad8" stroke-width="2" d="M968,-180C968,-180 802,-180 802,-180 796,-180 790,-174 790,-168 790,-168 790,-156 790,-156 790,-150 796,-144 802,-144 802,-144 968,-144 968,-144 974,-144 980,-150 980,-156 980,-156 980,-168 980,-168 980,-174 974,-180 968,-180"/>
<text text-anchor="middle" x="885" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">pe_index_genomic_alignment_samtools</text>
</g>
<!-- 14&#45;&gt;7 -->
<g id="edge19" class="edge">
<title>14&#45;&gt;7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M867.5884,-143.8314C859.479,-135.3694 849.6844,-125.1489 840.818,-115.8971"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="843.0921,-113.2115 833.646,-108.4133 838.0382,-118.0549 843.0921,-113.2115"/>
</g>
<!-- 15 -->
<g id="node16" class="node">
<title>15</title>
<path fill="none" stroke="#8fd856" stroke-width="2" d="M759.5,-180C759.5,-180 638.5,-180 638.5,-180 632.5,-180 626.5,-174 626.5,-168 626.5,-168 626.5,-156 626.5,-156 626.5,-150 632.5,-144 638.5,-144 638.5,-144 759.5,-144 759.5,-144 765.5,-144 771.5,-150 771.5,-156 771.5,-156 771.5,-168 771.5,-168 771.5,-174 765.5,-180 759.5,-180"/>
<text text-anchor="middle" x="699" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">extract_transcripts_as_bed12</text>
</g>
<!-- 15&#45;&gt;7 -->
<g id="edge20" class="edge">
<title>15&#45;&gt;7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M728.524,-143.8314C743.4891,-134.6221 761.8386,-123.3301 777.8603,-113.4706"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="779.8032,-116.3847 786.4854,-108.1628 776.1345,-110.423 779.8032,-116.3847"/>
</g>
<!-- 16 -->
<g id="node17" class="node">
<title>16</title>
<path fill="none" stroke="#61d856" stroke-width="2" d="M1160,-180C1160,-180 1010,-180 1010,-180 1004,-180 998,-174 998,-168 998,-168 998,-156 998,-156 998,-150 1004,-144 1010,-144 1010,-144 1160,-144 1160,-144 1166,-144 1172,-150 1172,-156 1172,-156 1172,-168 1172,-168 1172,-174 1166,-180 1160,-180"/>
<text text-anchor="middle" x="1085" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">index_genomic_alignment_samtools</text>
</g>
<!-- 16&#45;&gt;7 -->
<g id="edge18" class="edge">
<title>16&#45;&gt;7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1017.4672,-143.9243C975.9721,-132.8178 923.0599,-118.6554 881.8743,-107.6318"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="882.7719,-104.2489 872.207,-105.0442 880.9619,-111.0109 882.7719,-104.2489"/>
</g>
<!-- 17 -->
<g id="node18" class="node">
<title>17</title>
<path fill="none" stroke="#d86e56" stroke-width="2" d="M356,-396C356,-396 230,-396 230,-396 224,-396 218,-390 218,-384 218,-384 218,-372 218,-372 218,-366 224,-360 230,-360 230,-360 356,-360 356,-360 362,-360 368,-366 368,-372 368,-372 368,-384 368,-384 368,-390 362,-396 356,-396"/>
<text text-anchor="middle" x="293" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">pe_remove_adapters_cutadapt</text>
</g>
<!-- 17&#45;&gt;10 -->
<g id="edge25" class="edge">
<title>17&#45;&gt;10</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M293,-359.8314C293,-352.131 293,-342.9743 293,-334.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="296.5001,-334.4132 293,-324.4133 289.5001,-334.4133 296.5001,-334.4132"/>
</g>
<!-- 18 -->
<g id="node19" class="node">
<title>18</title>
<path fill="none" stroke="#a7d856" stroke-width="2" d="M478.5,-324C478.5,-324 391.5,-324 391.5,-324 385.5,-324 379.5,-318 379.5,-312 379.5,-312 379.5,-300 379.5,-300 379.5,-294 385.5,-288 391.5,-288 391.5,-288 478.5,-288 478.5,-288 484.5,-288 490.5,-294 490.5,-300 490.5,-300 490.5,-312 490.5,-312 490.5,-318 484.5,-324 478.5,-324"/>
<text text-anchor="middle" x="435" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">extract_transcriptome</text>
</g>
<!-- 18&#45;&gt;11 -->
<g id="edge26" class="edge">
<title>18&#45;&gt;11</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M440.2992,-287.8314C442.5698,-280.0463 445.2746,-270.7729 447.794,-262.1347"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="451.1894,-262.9933 450.6295,-252.4133 444.4694,-261.0332 451.1894,-262.9933"/>
</g>
<!-- 18&#45;&gt;13 -->
<g id="edge28" class="edge">
<title>18&#45;&gt;13</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M389.0737,-287.8314C364.4077,-278.0734 333.8309,-265.977 307.914,-255.7242"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="309.1824,-252.4621 298.596,-252.038 306.6073,-258.9713 309.1824,-252.4621"/>
</g>
<!-- 19 -->
<g id="node20" class="node">
<title>19</title>
<path fill="none" stroke="#bed856" stroke-width="2" d="M624,-396C624,-396 514,-396 514,-396 508,-396 502,-390 502,-384 502,-384 502,-372 502,-372 502,-366 508,-360 514,-360 514,-360 624,-360 624,-360 630,-360 636,-366 636,-372 636,-372 636,-384 636,-384 636,-390 630,-396 624,-396"/>
<text text-anchor="middle" x="569" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">remove_adapters_cutadapt</text>
</g>
<!-- 19&#45;&gt;12 -->
<g id="edge27" class="edge">
<title>19&#45;&gt;12</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M569,-359.8314C569,-352.131 569,-342.9743 569,-334.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="572.5001,-334.4132 569,-324.4133 565.5001,-334.4133 572.5001,-334.4132"/>
</g>
<!-- 20&#45;&gt;14 -->
<g id="edge29" class="edge">
<title>20&#45;&gt;14</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M773.599,-215.8314C793.3497,-206.2874 817.7297,-194.5065 838.6417,-184.4013"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="840.1903,-187.5403 847.6714,-180.038 837.1447,-181.2376 840.1903,-187.5403"/>
</g>
<!-- 21&#45;&gt;16 -->
<g id="edge30" class="edge">
<title>21&#45;&gt;16</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M907.7604,-218.4657C940.1409,-208.1498 983.0597,-194.4766 1018.5527,-183.169"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1019.886,-186.4177 1028.3517,-180.0472 1017.7611,-179.748 1019.886,-186.4177"/>
</g>
<!-- 22 -->
<g id="node23" class="node">
<title>22</title>
<path fill="none" stroke="#56c9d8" stroke-width="2" d="M832,-324C832,-324 762,-324 762,-324 756,-324 750,-318 750,-312 750,-312 750,-300 750,-300 750,-294 756,-288 762,-288 762,-288 832,-288 832,-288 838,-288 844,-294 844,-300 844,-300 844,-312 844,-312 844,-318 838,-324 832,-324"/>
<text text-anchor="middle" x="797" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">create_index_star</text>
</g>
<!-- 22&#45;&gt;20 -->
<g id="edge32" class="edge">
<title>22&#45;&gt;20</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M781.6071,-287.8314C774.5096,-279.454 765.952,-269.3531 758.176,-260.1749"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="760.7348,-257.7807 751.6001,-252.4133 755.3939,-262.3056 760.7348,-257.7807"/>
</g>
<!-- 22&#45;&gt;21 -->
<g id="edge33" class="edge">
<title>22&#45;&gt;21</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M812.6452,-287.8314C819.8591,-279.454 828.557,-269.3531 836.4605,-260.1749"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="839.2711,-262.2748 843.1441,-252.4133 833.9667,-257.7071 839.2711,-262.2748"/>
</g>
</g>
</svg>