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<!-- Title: snakemake_dag Pages: 1 -->
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<title>0</title>
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<text text-anchor="middle" x="1272.5" y="-15.5" font-family="sans" font-size="10.00" fill="#000000">finish</text>
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<title>1</title>
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<text text-anchor="middle" x="1272.5" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">MULTIQC_report</text>
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<title>1->0</title>
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<title>2</title>
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<text text-anchor="middle" x="1272.5" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">prepare_MultiQC_config</text>
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<title>2->1</title>
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<g id="node4" class="node">
<title>3</title>
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<text text-anchor="middle" x="1272.5" y="-237" font-family="sans" font-size="10.00" fill="#000000">prepare_files_for_report</text>
<text text-anchor="middle" x="1272.5" y="-226" font-family="sans" font-size="10.00" fill="#000000">output_dir: results</text>
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<title>3->2</title>
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<g id="node5" class="node">
<title>4</title>
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<text text-anchor="middle" x="162.5" y="-309" font-family="sans" font-size="10.00" fill="#000000">pe_fastqc</text>
<text text-anchor="middle" x="162.5" y="-298" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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<title>4->3</title>
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<title>5</title>
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<text text-anchor="middle" x="511.5" y="-309" font-family="sans" font-size="10.00" fill="#000000">fastqc</text>
<text text-anchor="middle" x="511.5" y="-298" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<title>5->3</title>
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<g id="node7" class="node">
<title>6</title>
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<text text-anchor="middle" x="825.5" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">pe_genome_quantification_kallisto</text>
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<title>6->3</title>
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<!-- 7 -->
<g id="node8" class="node">
<title>7</title>
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<g id="edge7" class="edge">
<title>7->3</title>
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<!-- 8 -->
<g id="node9" class="node">
<title>8</title>
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<text text-anchor="middle" x="1478.5" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">plot_TIN_scores</text>
<g id="edge8" class="edge">
<title>8->3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1484.4705,-359.7055C1489.6974,-339.8988 1494.2501,-308.4109 1478.5,-288 1462.4863,-267.2475 1401.0119,-252.9172 1349.3505,-244.2616"/>
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<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
<path fill="none" stroke="#bed856" stroke-width="2" d="M1068.5,-324C1068.5,-324 940.5,-324 940.5,-324 934.5,-324 928.5,-318 928.5,-312 928.5,-312 928.5,-300 928.5,-300 928.5,-294 934.5,-288 940.5,-288 940.5,-288 1068.5,-288 1068.5,-288 1074.5,-288 1080.5,-294 1080.5,-300 1080.5,-300 1080.5,-312 1080.5,-312 1080.5,-318 1074.5,-324 1068.5,-324"/>
<text text-anchor="middle" x="1004.5" y="-309" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="1004.5" y="-298" font-family="sans" font-size="10.00" fill="#000000">salmon_merge_on: tpm</text>
<g id="edge9" class="edge">
<title>9->3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1071.7818,-287.9243C1109.5176,-277.7863 1156.7309,-265.1022 1195.8851,-254.5831"/>
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<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
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<text text-anchor="middle" x="1179.5" y="-309" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="1179.5" y="-298" font-family="sans" font-size="10.00" fill="#000000">salmon_merge_on: numreads</text>
<g id="edge10" class="edge">
<title>10->3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1202.9678,-287.8314C1214.5327,-278.8779 1228.6404,-267.9558 1241.1183,-258.2955"/>
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<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
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<text text-anchor="middle" x="1365.5" y="-309" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="1365.5" y="-298" font-family="sans" font-size="10.00" fill="#000000">salmon_merge_on: tpm</text>
<g id="edge11" class="edge">
<title>11->3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1342.0322,-287.8314C1330.4673,-278.8779 1316.3596,-267.9558 1303.8817,-258.2955"/>
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<!-- 12 -->
<g id="node13" class="node">
<title>12</title>
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<text text-anchor="middle" x="823.5" y="-309" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="823.5" y="-298" font-family="sans" font-size="10.00" fill="#000000">salmon_merge_on: numreads</text>
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<title>12->3</title>
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<g id="node14" class="node">
<title>13</title>
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<text text-anchor="middle" x="1714.5" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">star_rpm</text>
<g id="edge13" class="edge">
<title>13->3</title>
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<!-- 40 -->
<g id="node41" class="node">
<title>40</title>
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<text text-anchor="middle" x="1821.5" y="-525" font-family="sans" font-size="10.00" fill="#000000">rename_star_rpm_for_alfa</text>
<text text-anchor="middle" x="1821.5" y="-514" font-family="sans" font-size="10.00" fill="#000000">unique: Unique</text>
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<!-- 13->40 -->
<g id="edge69" class="edge">
<title>13->40</title>
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<!-- 43 -->
<g id="node44" class="node">
<title>43</title>
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<text text-anchor="middle" x="1657.5" y="-525" font-family="sans" font-size="10.00" fill="#000000">rename_star_rpm_for_alfa</text>
<text text-anchor="middle" x="1657.5" y="-514" font-family="sans" font-size="10.00" fill="#000000">unique: UniqueMultiple</text>
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<!-- 13->43 -->
<g id="edge72" class="edge">
<title>13->43</title>
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<title>14</title>
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<text text-anchor="middle" x="2076.5" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">star_rpm</text>
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<title>14->3</title>
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<!-- 42 -->
<g id="node43" class="node">
<title>42</title>
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<text text-anchor="middle" x="2283.5" y="-525" font-family="sans" font-size="10.00" fill="#000000">rename_star_rpm_for_alfa</text>
<text text-anchor="middle" x="2283.5" y="-514" font-family="sans" font-size="10.00" fill="#000000">unique: Unique</text>
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<!-- 14->42 -->
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<title>14->42</title>
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<!-- 44 -->
<g id="node45" class="node">
<title>44</title>
<path fill="none" stroke="#5692d8" stroke-width="2" d="M2046.5,-540C2046.5,-540 1924.5,-540 1924.5,-540 1918.5,-540 1912.5,-534 1912.5,-528 1912.5,-528 1912.5,-516 1912.5,-516 1912.5,-510 1918.5,-504 1924.5,-504 1924.5,-504 2046.5,-504 2046.5,-504 2052.5,-504 2058.5,-510 2058.5,-516 2058.5,-516 2058.5,-528 2058.5,-528 2058.5,-534 2052.5,-540 2046.5,-540"/>
<text text-anchor="middle" x="1985.5" y="-525" font-family="sans" font-size="10.00" fill="#000000">rename_star_rpm_for_alfa</text>
<text text-anchor="middle" x="1985.5" y="-514" font-family="sans" font-size="10.00" fill="#000000">unique: UniqueMultiple</text>
</g>
<!-- 14->44 -->
<g id="edge73" class="edge">
<title>14->44</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M2053.5369,-575.8314C2042.3285,-566.9632 2028.6791,-556.1637 2016.5561,-546.5718"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="2018.4697,-543.6229 2008.4558,-540.1628 2014.1263,-549.1125 2018.4697,-543.6229"/>
<g id="node16" class="node">
<title>15</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" d="M1892,-324C1892,-324 1805,-324 1805,-324 1799,-324 1793,-318 1793,-312 1793,-312 1793,-300 1793,-300 1793,-294 1799,-288 1805,-288 1805,-288 1892,-288 1892,-288 1898,-288 1904,-294 1904,-300 1904,-300 1904,-312 1904,-312 1904,-318 1898,-324 1892,-324"/>
<text text-anchor="middle" x="1848.5" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">alfa_concat_results</text>
<g id="edge15" class="edge">
<title>15->3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1792.7473,-299.0309C1689.1854,-286.0857 1466.9881,-258.311 1349.2964,-243.5996"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1349.6346,-240.1147 1339.2776,-242.3472 1348.7663,-247.0606 1349.6346,-240.1147"/>
<!-- 16 -->
<g id="node17" class="node">
<title>16</title>
<path fill="none" stroke="#56d0d8" stroke-width="2" d="M1032.5,-830.5C1032.5,-830.5 904.5,-830.5 904.5,-830.5 898.5,-830.5 892.5,-824.5 892.5,-818.5 892.5,-818.5 892.5,-806.5 892.5,-806.5 892.5,-800.5 898.5,-794.5 904.5,-794.5 904.5,-794.5 1032.5,-794.5 1032.5,-794.5 1038.5,-794.5 1044.5,-800.5 1044.5,-806.5 1044.5,-806.5 1044.5,-818.5 1044.5,-818.5 1044.5,-824.5 1038.5,-830.5 1032.5,-830.5"/>
<text text-anchor="middle" x="968.5" y="-810" font-family="sans" font-size="10.00" fill="#000000">pe_remove_polya_cutadapt</text>
<!-- 16->6 -->
<g id="edge16" class="edge">
<title>16->6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M948.7584,-794.2151C923.0897,-768.348 881.5,-718.3581 881.5,-666 881.5,-666 881.5,-666 881.5,-522 881.5,-478.8617 859.4001,-433.0945 842.9668,-405.0255"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="845.8137,-402.9688 837.6512,-396.2143 839.82,-406.5847 845.8137,-402.9688"/>
<!-- 20 -->
<g id="node21" class="node">
<title>20</title>
<path fill="none" stroke="#d88556" stroke-width="2" d="M1067.5,-396C1067.5,-396 949.5,-396 949.5,-396 943.5,-396 937.5,-390 937.5,-384 937.5,-384 937.5,-372 937.5,-372 937.5,-366 943.5,-360 949.5,-360 949.5,-360 1067.5,-360 1067.5,-360 1073.5,-360 1079.5,-366 1079.5,-372 1079.5,-372 1079.5,-384 1079.5,-384 1079.5,-390 1073.5,-396 1067.5,-396"/>
<text text-anchor="middle" x="1008.5" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">pe_quantification_salmon</text>
</g>
<!-- 16->20 -->
<g id="edge40" class="edge">
<title>16->20</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M968.5,-794.4571C968.5,-766.8072 968.5,-712.2899 968.5,-666 968.5,-666 968.5,-666 968.5,-522 968.5,-480.2219 984.324,-434.0316 996.0664,-405.5067"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="999.3354,-406.7629 1000.017,-396.19 992.8908,-404.0301 999.3354,-406.7629"/>
<!-- 22 -->
<g id="node23" class="node">
<title>22</title>
<path fill="none" stroke="#56d8b9" stroke-width="2" d="M1716,-756C1716,-756 1615,-756 1615,-756 1609,-756 1603,-750 1603,-744 1603,-744 1603,-732 1603,-732 1603,-726 1609,-720 1615,-720 1615,-720 1716,-720 1716,-720 1722,-720 1728,-726 1728,-732 1728,-732 1728,-744 1728,-744 1728,-750 1722,-756 1716,-756"/>
<text text-anchor="middle" x="1665.5" y="-735.5" font-family="sans" font-size="10.00" fill="#000000">pe_map_genome_star</text>
<!-- 16->22 -->
<g id="edge45" class="edge">
<title>16->22</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1044.7512,-804.3498C1180.0467,-789.8885 1460.31,-759.9321 1592.9272,-745.7571"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1593.4149,-749.225 1602.9863,-744.6819 1592.6709,-742.2646 1593.4149,-749.225"/>
<!-- 17 -->
<g id="node18" class="node">
<title>17</title>
<path fill="none" stroke="#5673d8" stroke-width="2" d="M1245,-468C1245,-468 1148,-468 1148,-468 1142,-468 1136,-462 1136,-456 1136,-456 1136,-444 1136,-444 1136,-438 1142,-432 1148,-432 1148,-432 1245,-432 1245,-432 1251,-432 1257,-438 1257,-444 1257,-444 1257,-456 1257,-456 1257,-462 1251,-468 1245,-468"/>
<text text-anchor="middle" x="1196.5" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">create_index_kallisto</text>
</g>
<!-- 17->6 -->
<g id="edge17" class="edge">
<title>17->6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1135.8593,-434.1133C1132.6991,-433.3773 1129.5651,-432.6681 1126.5,-432 1107.1924,-427.7918 1008.5364,-410.2141 929.3559,-396.241"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="929.7669,-392.7595 919.3109,-394.4692 928.5509,-399.6531 929.7669,-392.7595"/>
</g>
<!-- 17->7 -->
<g id="edge19" class="edge">
<title>17->7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1229.3045,-431.8314C1246.0862,-422.5368 1266.6985,-411.1208 1284.6163,-401.1971"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1286.6538,-404.0696 1293.706,-396.1628 1283.2623,-397.9461 1286.6538,-404.0696"/>
<g id="node19" class="node">
<title>18</title>
<path fill="none" stroke="#5682d8" stroke-width="2" d="M1378.5,-830.5C1378.5,-830.5 1268.5,-830.5 1268.5,-830.5 1262.5,-830.5 1256.5,-824.5 1256.5,-818.5 1256.5,-818.5 1256.5,-806.5 1256.5,-806.5 1256.5,-800.5 1262.5,-794.5 1268.5,-794.5 1268.5,-794.5 1378.5,-794.5 1378.5,-794.5 1384.5,-794.5 1390.5,-800.5 1390.5,-806.5 1390.5,-806.5 1390.5,-818.5 1390.5,-818.5 1390.5,-824.5 1384.5,-830.5 1378.5,-830.5"/>
<text text-anchor="middle" x="1323.5" y="-810" font-family="sans" font-size="10.00" fill="#000000">remove_polya_cutadapt</text>
<!-- 18->7 -->
<g id="edge18" class="edge">
<title>18->7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1323.5,-794.4571C1323.5,-766.8072 1323.5,-712.2899 1323.5,-666 1323.5,-666 1323.5,-666 1323.5,-522 1323.5,-481.8673 1324.6792,-435.4566 1325.5589,-406.414"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1329.0645,-406.2872 1325.8784,-396.1828 1322.0679,-406.0687 1329.0645,-406.2872"/>
<!-- 21 -->
<g id="node22" class="node">
<title>21</title>
<path fill="none" stroke="#70d856" stroke-width="2" d="M1211,-396C1211,-396 1110,-396 1110,-396 1104,-396 1098,-390 1098,-384 1098,-384 1098,-372 1098,-372 1098,-366 1104,-360 1110,-360 1110,-360 1211,-360 1211,-360 1217,-360 1223,-366 1223,-372 1223,-372 1223,-384 1223,-384 1223,-390 1217,-396 1211,-396"/>
<text text-anchor="middle" x="1160.5" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">quantification_salmon</text>
<!-- 18->21 -->
<g id="edge42" class="edge">
<title>18->21</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1315.6264,-794.3912C1304.4959,-767.101 1285.5,-713.559 1285.5,-666 1285.5,-666 1285.5,-666 1285.5,-522 1285.5,-481.1184 1291.3659,-464.4499 1266.5,-432 1256.3571,-418.7635 1242.0678,-408.5049 1227.2566,-400.6623"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1228.5151,-397.3802 1217.9995,-396.0865 1225.4131,-403.6554 1228.5151,-397.3802"/>
<g id="node25" class="node">
<title>24</title>
<path fill="none" stroke="#8fd856" stroke-width="2" d="M1919,-756C1919,-756 1836,-756 1836,-756 1830,-756 1824,-750 1824,-744 1824,-744 1824,-732 1824,-732 1824,-726 1830,-720 1836,-720 1836,-720 1919,-720 1919,-720 1925,-720 1931,-726 1931,-732 1931,-732 1931,-744 1931,-744 1931,-750 1925,-756 1919,-756"/>
<text text-anchor="middle" x="1877.5" y="-735.5" font-family="sans" font-size="10.00" fill="#000000">map_genome_star</text>
<g id="edge48" class="edge">
<title>18->24</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1390.6012,-803.4765C1498.215,-789.0049 1707.988,-760.7954 1813.5612,-746.5983"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1814.3093,-750.0293 1823.7536,-745.2276 1813.3763,-743.0917 1814.3093,-750.0293"/>
<g id="node20" class="node">
<title>19</title>
<path fill="none" stroke="#61d856" stroke-width="2" d="M1516,-540C1516,-540 1433,-540 1433,-540 1427,-540 1421,-534 1421,-528 1421,-528 1421,-516 1421,-516 1421,-510 1427,-504 1433,-504 1433,-504 1516,-504 1516,-504 1522,-504 1528,-510 1528,-516 1528,-516 1528,-528 1528,-528 1528,-534 1522,-540 1516,-540"/>
<text text-anchor="middle" x="1474.5" y="-519.5" font-family="sans" font-size="10.00" fill="#000000">merge_TIN_scores</text>
</g>
<!-- 19->8 -->
<g id="edge20" class="edge">
<title>19->8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1475.0066,-503.7623C1475.6889,-479.201 1476.9098,-435.2474 1477.7124,-406.3541"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1481.2184,-406.183 1477.9975,-396.0896 1474.2211,-405.9885 1481.2184,-406.183"/>
</g>
<!-- 20->9 -->
<g id="edge21" class="edge">
<title>20->9</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1007.4906,-359.8314C1007.0628,-352.131 1006.5541,-342.9743 1006.0787,-334.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1009.5724,-334.2037 1005.523,-324.4133 1002.5831,-334.592 1009.5724,-334.2037"/>
</g>
<!-- 20->10 -->
<g id="edge23" class="edge">
<title>20->10</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1051.6505,-359.8314C1074.6224,-350.159 1103.0509,-338.1891 1127.2632,-327.9944"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1128.8016,-331.1443 1136.6598,-324.038 1126.0852,-324.6929 1128.8016,-331.1443"/>
</g>
<!-- 20->11 -->
<g id="edge25" class="edge">
<title>20->11</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1079.596,-362.0935C1082.9424,-361.3786 1086.2567,-360.6775 1089.5,-360 1148.7676,-347.6189 1215.3792,-334.5617 1268.3127,-324.3886"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1269.2099,-327.7804 1278.3712,-322.4586 1267.8907,-320.9058 1269.2099,-327.7804"/>
</g>
<!-- 20->12 -->
<g id="edge27" class="edge">
<title>20->12</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M961.8167,-359.8314C936.7441,-350.0734 905.6633,-337.977 879.3191,-327.7242"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="880.4362,-324.4033 869.8476,-324.038 877.8973,-330.9266 880.4362,-324.4033"/>
</g>
<!-- 21->9 -->
<g id="edge22" class="edge">
<title>21->9</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1121.1346,-359.8314C1100.3633,-350.2446 1074.7017,-338.4008 1052.7419,-328.2655"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1054.1286,-325.0508 1043.5823,-324.038 1051.1952,-331.4065 1054.1286,-325.0508"/>
</g>
<!-- 21->10 -->
<g id="edge24" class="edge">
<title>21->10</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1165.2945,-359.8314C1167.3489,-352.0463 1169.796,-342.7729 1172.0756,-334.1347"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1175.4735,-334.9753 1174.6409,-324.4133 1168.7052,-333.1892 1175.4735,-334.9753"/>
</g>
<!-- 21->11 -->
<g id="edge26" class="edge">
<title>21->11</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1211.9655,-359.9243C1239.9902,-350.0815 1274.8484,-337.8386 1304.264,-327.5073"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1305.7381,-330.6992 1314.0133,-324.0831 1303.4184,-324.0947 1305.7381,-330.6992"/>
</g>
<!-- 21->12 -->
<g id="edge28" class="edge">
<title>21->12</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1097.7102,-362.13C1094.5989,-361.3978 1091.5158,-360.6839 1088.5,-360 1033.0156,-347.4177 970.6855,-334.6484 920.4208,-324.6881"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="921.0232,-321.2395 910.5344,-322.7343 919.6661,-328.1067 921.0232,-321.2395"/>
</g>
<!-- 22->13 -->
<g id="edge29" class="edge">
<title>22->13</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1728.0603,-720.2456C1745.4625,-712.1131 1762.3571,-700.4803 1772.5,-684 1780.8863,-670.3739 1778.8858,-662.6704 1772.5,-648 1767.6585,-636.8773 1759.2717,-627.0106 1750.3561,-618.8541"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1752.3456,-615.9515 1742.4609,-612.138 1747.81,-621.2833 1752.3456,-615.9515"/>
<g id="node24" class="node">
<title>23</title>
<path fill="none" stroke="#56c1d8" stroke-width="2" d="M1751.5,-684C1751.5,-684 1579.5,-684 1579.5,-684 1573.5,-684 1567.5,-678 1567.5,-672 1567.5,-672 1567.5,-660 1567.5,-660 1567.5,-654 1573.5,-648 1579.5,-648 1579.5,-648 1751.5,-648 1751.5,-648 1757.5,-648 1763.5,-654 1763.5,-660 1763.5,-660 1763.5,-672 1763.5,-672 1763.5,-678 1757.5,-684 1751.5,-684"/>
<text text-anchor="middle" x="1665.5" y="-669" font-family="sans" font-size="10.00" fill="#000000">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1665.5" y="-658" font-family="sans" font-size="10.00" fill="#000000">seqmode: paired_end</text>
</g>
<!-- 22->23 -->
<g id="edge46" class="edge">
<title>22->23</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1665.5,-719.8314C1665.5,-712.131 1665.5,-702.9743 1665.5,-694.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1669.0001,-694.4132 1665.5,-684.4133 1662.0001,-694.4133 1669.0001,-694.4132"/>
<!-- 31 -->
<g id="node32" class="node">
<title>31</title>
<path fill="none" stroke="#d89556" stroke-width="2" d="M1517,-612C1517,-612 1422,-612 1422,-612 1416,-612 1410,-606 1410,-600 1410,-600 1410,-588 1410,-588 1410,-582 1416,-576 1422,-576 1422,-576 1517,-576 1517,-576 1523,-576 1529,-582 1529,-588 1529,-588 1529,-600 1529,-600 1529,-606 1523,-612 1517,-612"/>
<text text-anchor="middle" x="1469.5" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">calculate_TIN_scores</text>
</g>
<!-- 22->31 -->
<g id="edge54" class="edge">
<title>22->31</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1602.8337,-735.1678C1527.6304,-730.302 1408.1672,-717.4016 1380.5,-684 1370.2936,-671.6781 1372.6512,-661.9426 1380.5,-648 1387.7034,-635.2038 1399.2994,-625.0907 1411.7742,-617.2465"/>
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</g>
<!-- 23->13 -->
<g id="edge30" class="edge">
<title>23->13</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1677.8648,-647.8314C1683.4509,-639.6232 1690.163,-629.7606 1696.3072,-620.7323"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1699.236,-622.6496 1701.9687,-612.4133 1693.449,-618.7112 1699.236,-622.6496"/>
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<!-- 23->31 -->
<g id="edge55" class="edge">
<title>23->31</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1616.2939,-647.9243C1589.6161,-638.1243 1556.4614,-625.945 1528.4148,-615.6422"/>
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<!-- 24->14 -->
<g id="edge31" class="edge">
<title>24->14</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1931.3273,-728.8736C1979.5156,-719.575 2045.1704,-703.7364 2062.5,-684 2077.1133,-667.3572 2079.9269,-641.985 2079.4782,-622.4174"/>
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<g id="node26" class="node">
<title>25</title>
<path fill="none" stroke="#56c1d8" stroke-width="2" d="M2041.5,-684C2041.5,-684 1869.5,-684 1869.5,-684 1863.5,-684 1857.5,-678 1857.5,-672 1857.5,-672 1857.5,-660 1857.5,-660 1857.5,-654 1863.5,-648 1869.5,-648 1869.5,-648 2041.5,-648 2041.5,-648 2047.5,-648 2053.5,-654 2053.5,-660 2053.5,-660 2053.5,-672 2053.5,-672 2053.5,-678 2047.5,-684 2041.5,-684"/>
<text text-anchor="middle" x="1955.5" y="-669" font-family="sans" font-size="10.00" fill="#000000">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1955.5" y="-658" font-family="sans" font-size="10.00" fill="#000000">seqmode: single_end</text>
<g id="edge49" class="edge">
<title>24->25</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1897.1827,-719.8314C1906.6051,-711.1337 1918.0401,-700.5783 1928.2796,-691.1265"/>
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<!-- 32 -->
<g id="node33" class="node">
<title>32</title>
<path fill="none" stroke="#d89556" stroke-width="2" d="M1654,-612C1654,-612 1559,-612 1559,-612 1553,-612 1547,-606 1547,-600 1547,-600 1547,-588 1547,-588 1547,-582 1553,-576 1559,-576 1559,-576 1654,-576 1654,-576 1660,-576 1666,-582 1666,-588 1666,-588 1666,-600 1666,-600 1666,-606 1660,-612 1654,-612"/>
<text text-anchor="middle" x="1606.5" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">calculate_TIN_scores</text>
</g>
<!-- 24->32 -->
<g id="edge57" class="edge">
<title>24->32</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1860.5781,-719.6848C1841.0852,-699.561 1807.253,-667.5109 1772.5,-648 1755.4585,-638.4326 1713.4539,-624.7991 1675.9648,-613.625"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1676.6257,-610.1707 1666.0438,-610.6929 1674.6417,-616.8837 1676.6257,-610.1707"/>
</g>
<!-- 25->14 -->
<g id="edge32" class="edge">
<title>25->14</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1986.0334,-647.8314C2001.6282,-638.5518 2020.7768,-627.1576 2037.4354,-617.2451"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="2039.5916,-620.0348 2046.3955,-611.9134 2036.0121,-614.0193 2039.5916,-620.0348"/>
</g>
<!-- 25->32 -->
<g id="edge58" class="edge">
<title>25->32</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1857.3424,-648.6759C1806.1098,-639.2504 1742.2062,-626.8981 1676.4252,-612.1395"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1676.8068,-608.6376 1666.2813,-609.8477 1675.2641,-615.4655 1676.8068,-608.6376"/>
</g>
<!-- 26 -->
<g id="node27" class="node">
<title>26</title>
<path fill="none" stroke="#56d8c9" stroke-width="2" d="M2028.5,-396C2028.5,-396 1936.5,-396 1936.5,-396 1930.5,-396 1924.5,-390 1924.5,-384 1924.5,-384 1924.5,-372 1924.5,-372 1924.5,-366 1930.5,-360 1936.5,-360 1936.5,-360 2028.5,-360 2028.5,-360 2034.5,-360 2040.5,-366 2040.5,-372 2040.5,-372 2040.5,-384 2040.5,-384 2040.5,-390 2034.5,-396 2028.5,-396"/>
<text text-anchor="middle" x="1982.5" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc_all_samples</text>
</g>
<!-- 26->15 -->
<g id="edge33" class="edge">
<title>26->15</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1948.6861,-359.8314C1931.2293,-350.4516 1909.7513,-338.9112 1891.1648,-328.9244"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1892.7686,-325.8129 1882.303,-324.1628 1889.4554,-331.9792 1892.7686,-325.8129"/>
<g id="node28" class="node">
<title>27</title>
<path fill="none" stroke="#56d8c9" stroke-width="2" d="M1894.5,-396C1894.5,-396 1802.5,-396 1802.5,-396 1796.5,-396 1790.5,-390 1790.5,-384 1790.5,-384 1790.5,-372 1790.5,-372 1790.5,-366 1796.5,-360 1802.5,-360 1802.5,-360 1894.5,-360 1894.5,-360 1900.5,-360 1906.5,-366 1906.5,-372 1906.5,-372 1906.5,-384 1906.5,-384 1906.5,-390 1900.5,-396 1894.5,-396"/>
<text text-anchor="middle" x="1848.5" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc_all_samples</text>
<!-- 27->15 -->
<g id="edge34" class="edge">
<title>27->15</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1848.5,-359.8314C1848.5,-352.131 1848.5,-342.9743 1848.5,-334.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1852.0001,-334.4132 1848.5,-324.4133 1845.0001,-334.4133 1852.0001,-334.4132"/>
<!-- 28 -->
<g id="node29" class="node">
<title>28</title>
<path fill="none" stroke="#56d86b" stroke-width="2" d="M1119,-905C1119,-905 818,-905 818,-905 812,-905 806,-899 806,-893 806,-893 806,-881 806,-881 806,-875 812,-869 818,-869 818,-869 1119,-869 1119,-869 1125,-869 1131,-875 1131,-881 1131,-881 1131,-893 1131,-893 1131,-899 1125,-905 1119,-905"/>
<text text-anchor="middle" x="968.5" y="-890" font-family="sans" font-size="10.00" fill="#000000">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="968.5" y="-879" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
</g>
<!-- 28->16 -->
<g id="edge35" class="edge">
<title>28->16</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M968.5,-868.9656C968.5,-860.5178 968.5,-850.2542 968.5,-840.8064"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="972.0001,-840.6265 968.5,-830.6265 965.0001,-840.6265 972.0001,-840.6265"/>
<g id="node30" class="node">
<title>29</title>
<path fill="none" stroke="#d8b456" stroke-width="2" d="M1185,-540C1185,-540 1070,-540 1070,-540 1064,-540 1058,-534 1058,-528 1058,-528 1058,-516 1058,-516 1058,-510 1064,-504 1070,-504 1070,-504 1185,-504 1185,-504 1191,-504 1197,-510 1197,-516 1197,-516 1197,-528 1197,-528 1197,-534 1191,-540 1185,-540"/>
<text text-anchor="middle" x="1127.5" y="-525" font-family="sans" font-size="10.00" fill="#000000">extract_transcriptome</text>
<text text-anchor="middle" x="1127.5" y="-514" font-family="sans" font-size="10.00" fill="#000000">organism: homo_sapiens</text>
</g>
<!-- 29->17 -->
<g id="edge36" class="edge">
<title>29->17</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1144.9116,-503.8314C1153.021,-495.3694 1162.8156,-485.1489 1171.682,-475.8971"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1174.4618,-478.0549 1178.854,-468.4133 1169.4079,-473.2115 1174.4618,-478.0549"/>
<!-- 33 -->
<g id="node34" class="node">
<title>33</title>
<path fill="none" stroke="#56d88a" stroke-width="2" d="M1106,-468C1106,-468 1009,-468 1009,-468 1003,-468 997,-462 997,-456 997,-456 997,-444 997,-444 997,-438 1003,-432 1009,-432 1009,-432 1106,-432 1106,-432 1112,-432 1118,-438 1118,-444 1118,-444 1118,-456 1118,-456 1118,-462 1112,-468 1106,-468"/>
<text text-anchor="middle" x="1057.5" y="-453" font-family="sans" font-size="10.00" fill="#000000">create_index_salmon</text>
<text text-anchor="middle" x="1057.5" y="-442" font-family="sans" font-size="10.00" fill="#000000">kmer: 31</text>
</g>
<!-- 29->33 -->
<g id="edge60" class="edge">
<title>29->33</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1109.836,-503.8314C1101.5268,-495.2848 1091.4736,-484.9443 1082.4082,-475.6198"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1084.8821,-473.1435 1075.4018,-468.4133 1079.8631,-478.023 1084.8821,-473.1435"/>
<!-- 30 -->
<g id="node31" class="node">
<title>30</title>
<path fill="none" stroke="#56d89a" stroke-width="2" d="M1480,-905C1480,-905 1167,-905 1167,-905 1161,-905 1155,-899 1155,-893 1155,-893 1155,-881 1155,-881 1155,-875 1161,-869 1167,-869 1167,-869 1480,-869 1480,-869 1486,-869 1492,-875 1492,-881 1492,-881 1492,-893 1492,-893 1492,-899 1486,-905 1480,-905"/>
<text text-anchor="middle" x="1323.5" y="-890" font-family="sans" font-size="10.00" fill="#000000">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1323.5" y="-879" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
</g>
<!-- 30->18 -->
<g id="edge37" class="edge">
<title>30->18</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1323.5,-868.9656C1323.5,-860.5178 1323.5,-850.2542 1323.5,-840.8064"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1327.0001,-840.6265 1323.5,-830.6265 1320.0001,-840.6265 1327.0001,-840.6265"/>
</g>
<!-- 31->19 -->
<g id="edge38" class="edge">
<title>31->19</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1470.7617,-575.8314C1471.2965,-568.131 1471.9323,-558.9743 1472.5266,-550.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1476.02,-550.6317 1473.2213,-540.4133 1469.0368,-550.1467 1476.02,-550.6317"/>
<!-- 32->19 -->
<g id="edge39" class="edge">
<title>32->19</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1573.1908,-575.8314C1556.0727,-566.4942 1535.0294,-555.016 1516.7778,-545.0606"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1518.2535,-541.8788 1507.7985,-540.1628 1514.9015,-548.024 1518.2535,-541.8788"/>
<!-- 33->20 -->
<g id="edge41" class="edge">
<title>33->20</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1045.1352,-431.8314C1039.5491,-423.6232 1032.837,-413.7606 1026.6928,-404.7323"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1029.551,-402.7112 1021.0313,-396.4133 1023.764,-406.6496 1029.551,-402.7112"/>
<!-- 33->21 -->
<g id="edge43" class="edge">
<title>33->21</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1083.4912,-431.8314C1096.4216,-422.7927 1112.2222,-411.7476 1126.1383,-402.0198"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1128.3263,-404.7608 1134.5171,-396.1628 1124.3157,-399.0235 1128.3263,-404.7608"/>
<!-- 34 -->
<g id="node35" class="node">
<title>34</title>
<path fill="none" stroke="#d87556" stroke-width="2" d="M1935,-833C1935,-833 1820,-833 1820,-833 1814,-833 1808,-827 1808,-821 1808,-821 1808,-804 1808,-804 1808,-798 1814,-792 1820,-792 1820,-792 1935,-792 1935,-792 1941,-792 1947,-798 1947,-804 1947,-804 1947,-821 1947,-821 1947,-827 1941,-833 1935,-833"/>
<text text-anchor="middle" x="1877.5" y="-821" font-family="sans" font-size="10.00" fill="#000000">create_index_star</text>
<text text-anchor="middle" x="1877.5" y="-810" font-family="sans" font-size="10.00" fill="#000000">index_size: 75</text>
<text text-anchor="middle" x="1877.5" y="-799" font-family="sans" font-size="10.00" fill="#000000">organism: homo_sapiens</text>
</g>
<!-- 34->22 -->
<g id="edge44" class="edge">
<title>34->22</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1819.0089,-791.9453C1790.2695,-781.8459 1755.6554,-769.682 1726.576,-759.463"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1727.5378,-756.0912 1716.9429,-756.0778 1725.2169,-762.6953 1727.5378,-756.0912"/>
</g>
<!-- 34->24 -->
<g id="edge47" class="edge">
<title>34->24</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1877.5,-791.7476C1877.5,-783.8767 1877.5,-774.7743 1877.5,-766.3232"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1881.0001,-766.1086 1877.5,-756.1087 1874.0001,-766.1087 1881.0001,-766.1086"/>
</g>
<!-- 41 -->
<g id="node42" class="node">
<title>41</title>
<path fill="none" stroke="#56b1d8" stroke-width="2" d="M2180.5,-540C2180.5,-540 2088.5,-540 2088.5,-540 2082.5,-540 2076.5,-534 2076.5,-528 2076.5,-528 2076.5,-516 2076.5,-516 2076.5,-510 2082.5,-504 2088.5,-504 2088.5,-504 2180.5,-504 2180.5,-504 2186.5,-504 2192.5,-510 2192.5,-516 2192.5,-516 2192.5,-528 2192.5,-528 2192.5,-534 2186.5,-540 2180.5,-540"/>
<text text-anchor="middle" x="2134.5" y="-519.5" font-family="sans" font-size="10.00" fill="#000000">generate_alfa_index</text>
</g>
<!-- 34->41 -->
<g id="edge70" class="edge">
<title>34->41</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1927.0531,-791.9156C1972.8687,-770.722 2040.2186,-733.7833 2083.5,-684 2116.8987,-645.584 2128.4448,-585.3066 2132.4228,-550.1245"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="2135.9164,-550.3626 2133.4302,-540.0636 2128.9512,-549.6651 2135.9164,-550.3626"/>
<!-- 35 -->
<g id="node36" class="node">
<title>35</title>
<path fill="none" stroke="#d86656" stroke-width="2" d="M1966.5,-468C1966.5,-468 1936.5,-468 1936.5,-468 1930.5,-468 1924.5,-462 1924.5,-456 1924.5,-456 1924.5,-444 1924.5,-444 1924.5,-438 1930.5,-432 1936.5,-432 1936.5,-432 1966.5,-432 1966.5,-432 1972.5,-432 1978.5,-438 1978.5,-444 1978.5,-444 1978.5,-456 1978.5,-456 1978.5,-462 1972.5,-468 1966.5,-468"/>
<text text-anchor="middle" x="1951.5" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc</text>
<!-- 35->26 -->
<g id="edge50" class="edge">
<title>35->26</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1959.3226,-431.8314C1962.7109,-423.9617 1966.7541,-414.5712 1970.5076,-405.8533"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1973.8321,-406.9822 1974.5721,-396.4133 1967.4027,-404.214 1973.8321,-406.9822"/>
<!-- 36 -->
<g id="node37" class="node">
<title>36</title>
<path fill="none" stroke="#d86656" stroke-width="2" d="M2149.5,-468C2149.5,-468 2119.5,-468 2119.5,-468 2113.5,-468 2107.5,-462 2107.5,-456 2107.5,-456 2107.5,-444 2107.5,-444 2107.5,-438 2113.5,-432 2119.5,-432 2119.5,-432 2149.5,-432 2149.5,-432 2155.5,-432 2161.5,-438 2161.5,-444 2161.5,-444 2161.5,-456 2161.5,-456 2161.5,-462 2155.5,-468 2149.5,-468"/>
<text text-anchor="middle" x="2134.5" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc</text>
<!-- 36->26 -->
<g id="edge51" class="edge">
<title>36->26</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M2107.3254,-437.1278C2085.8027,-426.9329 2055.2203,-412.4465 2029.7138,-400.3645"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="2031.1083,-397.1522 2020.5725,-396.0344 2028.1116,-403.4784 2031.1083,-397.1522"/>
<g id="node38" class="node">
<title>37</title>
<path fill="none" stroke="#d86656" stroke-width="2" d="M1863.5,-468C1863.5,-468 1833.5,-468 1833.5,-468 1827.5,-468 1821.5,-462 1821.5,-456 1821.5,-456 1821.5,-444 1821.5,-444 1821.5,-438 1827.5,-432 1833.5,-432 1833.5,-432 1863.5,-432 1863.5,-432 1869.5,-432 1875.5,-438 1875.5,-444 1875.5,-444 1875.5,-456 1875.5,-456 1875.5,-462 1869.5,-468 1863.5,-468"/>
<text text-anchor="middle" x="1848.5" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc</text>
</g>
<!-- 37->27 -->
<g id="edge52" class="edge">
<title>37->27</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1848.5,-431.8314C1848.5,-424.131 1848.5,-414.9743 1848.5,-406.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1852.0001,-406.4132 1848.5,-396.4133 1845.0001,-406.4133 1852.0001,-406.4132"/>
<g id="node39" class="node">
<title>38</title>
<path fill="none" stroke="#d86656" stroke-width="2" d="M2038.5,-468C2038.5,-468 2008.5,-468 2008.5,-468 2002.5,-468 1996.5,-462 1996.5,-456 1996.5,-456 1996.5,-444 1996.5,-444 1996.5,-438 2002.5,-432 2008.5,-432 2008.5,-432 2038.5,-432 2038.5,-432 2044.5,-432 2050.5,-438 2050.5,-444 2050.5,-444 2050.5,-456 2050.5,-456 2050.5,-462 2044.5,-468 2038.5,-468"/>
<text text-anchor="middle" x="2023.5" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc</text>
</g>
<!-- 38->27 -->
<g id="edge53" class="edge">
<title>38->27</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1996.1081,-435.975C1993.2192,-434.5947 1990.311,-433.2455 1987.5,-432 1961.6937,-420.5654 1932.6567,-409.076 1907.8216,-399.6524"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1908.7628,-396.2668 1898.171,-396.0138 1906.2933,-402.8168 1908.7628,-396.2668"/>
</g>
<!-- 39 -->
<g id="node40" class="node">
<title>39</title>
<path fill="none" stroke="#d8a456" stroke-width="2" d="M1537.5,-684C1537.5,-684 1401.5,-684 1401.5,-684 1395.5,-684 1389.5,-678 1389.5,-672 1389.5,-672 1389.5,-660 1389.5,-660 1389.5,-654 1395.5,-648 1401.5,-648 1401.5,-648 1537.5,-648 1537.5,-648 1543.5,-648 1549.5,-654 1549.5,-660 1549.5,-660 1549.5,-672 1549.5,-672 1549.5,-678 1543.5,-684 1537.5,-684"/>
<text text-anchor="middle" x="1469.5" y="-663.5" font-family="sans" font-size="10.00" fill="#000000">extract_transcripts_as_bed12</text>
</g>
<!-- 39->31 -->
<g id="edge56" class="edge">
<title>39->31</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1469.5,-647.8314C1469.5,-640.131 1469.5,-630.9743 1469.5,-622.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1473.0001,-622.4132 1469.5,-612.4133 1466.0001,-622.4133 1473.0001,-622.4132"/>
</g>
<!-- 39->32 -->
<g id="edge59" class="edge">
<title>39->32</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1504.0709,-647.8314C1521.9185,-638.4516 1543.8774,-626.9112 1562.88,-616.9244"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1564.7164,-619.9132 1571.9402,-612.1628 1561.4599,-613.7168 1564.7164,-619.9132"/>
</g>
<!-- 40->35 -->
<g id="edge61" class="edge">
<title>40->35</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1854.3045,-503.8314C1873.0055,-493.4739 1896.4632,-480.4819 1915.6483,-469.8563"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1917.3538,-472.9127 1924.406,-465.0059 1913.9623,-466.7892 1917.3538,-472.9127"/>
</g>
<!-- 41->35 -->
<g id="edge62" class="edge">
<title>41->35</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M2080.8637,-503.9168C2055.067,-494.8474 2023.6154,-483.2493 1988.3984,-468.1973"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1989.4363,-464.833 1978.8684,-464.0786 1986.6593,-471.2586 1989.4363,-464.833"/>
</g>
<!-- 41->36 -->
<g id="edge64" class="edge">
<title>41->36</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M2134.5,-503.8314C2134.5,-496.131 2134.5,-486.9743 2134.5,-478.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="2138.0001,-478.4132 2134.5,-468.4133 2131.0001,-478.4133 2138.0001,-478.4132"/>
</g>
<!-- 41->37 -->
<g id="edge66" class="edge">
<title>41->37</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M2076.4231,-506.2834C2073.4075,-505.503 2070.4193,-504.7377 2067.5,-504 2000.1912,-486.9918 1982.8088,-485.0082 1915.5,-468 1905.7065,-465.5253 1895.139,-462.7402 1885.3557,-460.1136"/>
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</g>
<!-- 41->38 -->
<g id="edge68" class="edge">
<title>41->38</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M2106.49,-503.8314C2092.2091,-494.5681 2074.6795,-483.1975 2059.4166,-473.2972"/>
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</g>
<!-- 42->36 -->
<g id="edge63" class="edge">
<title>42->36</title>
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</g>
<!-- 43->37 -->
<g id="edge65" class="edge">
<title>43->37</title>
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<!-- 44->38 -->
<g id="edge67" class="edge">
<title>44->38</title>
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<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="2012.2096,-478.8908 2013.7819,-468.4133 2006.0189,-475.6235 2012.2096,-478.8908"/>