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Commit 36c02328 authored by BIOPZ-Bak Maciej's avatar BIOPZ-Bak Maciej Committed by BIOPZ-Gypas Foivos
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MultiQC report: custom plugin for zpca. Fixes #146

parent e265ed75
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1 merge request!82MultiQC report: custom plugin for zpca
......@@ -1072,7 +1072,7 @@ rule pca_salmon:
threads: 1
singularity:
"docker://zavolab/zpca:0.8"
"docker://zavolab/zpca:0.8.3-1"
shell:
"(zpca-tpm \
......@@ -1118,7 +1118,7 @@ rule pca_kallisto:
threads: 1
singularity:
"docker://zavolab/zpca:0.8"
"docker://zavolab/zpca:0.8.3-1"
shell:
"(zpca-tpm \
......@@ -1630,7 +1630,7 @@ rule multiqc_report:
current_rule + ".stdout.log")
singularity:
"docker://zavolab/multiqc-plugins:1.0.0"
"docker://zavolab/multiqc-plugins:1.2.1"
shell:
"(multiqc \
......
......@@ -125,6 +125,26 @@ module_order:
path_filters:
- "*/*/*genome_quantification_kallisto*.stderr.log"
- zpca:
name: "zpca: salmon | gene expression"
path_filters:
- "*/zpca/pca_salmon_genes/*"
- zpca:
name: "zpca: salmon | transcript expression"
path_filters:
- "*/zpca/pca_salmon_transcripts/*"
- zpca:
name: "zpca: kallisto | gene expression"
path_filters:
- "*/zpca/pca_kallisto_genes/*"
- zpca:
name: "zpca: kallisto | transcript expression"
path_filters:
- "*/zpca/pca_kallisto_transcripts/*"
fn_clean_exts:
- '.fq1'
- '.gz'
......
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