MultiQC report: custom plugin for zpca. Fixes #146

Snakefile

@@ -1072,7 +1072,7 @@ rule pca_salmon:
     threads: 1
 
     singularity:
-        "docker://zavolab/zpca:0.8"
+        "docker://zavolab/zpca:0.8.3-1"
 
     shell:
         "(zpca-tpm  \
@@ -1118,7 +1118,7 @@ rule pca_kallisto:
     threads: 1
 
     singularity:
-        "docker://zavolab/zpca:0.8"
+        "docker://zavolab/zpca:0.8.3-1"
 
     shell:
         "(zpca-tpm  \
@@ -1630,7 +1630,7 @@ rule multiqc_report:
             current_rule + ".stdout.log")
 
     singularity:
-        "docker://zavolab/multiqc-plugins:1.0.0"
+        "docker://zavolab/multiqc-plugins:1.2.1"
 
     shell:
         "(multiqc \

workflow/scripts/zarp_multiqc_config.py

@@ -125,6 +125,26 @@ module_order:
       path_filters:
       - "*/*/*genome_quantification_kallisto*.stderr.log"
 
+  - zpca:
+      name: "zpca: salmon | gene expression"
+      path_filters:
+      - "*/zpca/pca_salmon_genes/*"
+
+  - zpca:
+      name: "zpca: salmon | transcript expression"
+      path_filters:
+      - "*/zpca/pca_salmon_transcripts/*"
+
+  - zpca:
+      name: "zpca: kallisto | gene expression"
+      path_filters:
+      - "*/zpca/pca_kallisto_genes/*"
+
+  - zpca:
+      name: "zpca: kallisto | transcript expression"
+      path_filters:
+      - "*/zpca/pca_kallisto_transcripts/*"
+
 fn_clean_exts:
   - '.fq1'
   - '.gz'