A tool to to reduce large phylogenetic datasets with minimal loss of diversity.
A tool to reduce large phylogenetic datasets with minimal loss of diversity.
Here you find the software, the data and scripts used in the manuscript (Influenza_data, MTB_data and stochasticcomponent), and a short tutorial on fine tuning the behaviour of Treemmer with the pruning options.
Here you find the software, the data and scripts used in the manuscript (Influenza_data, MTB_data and stochastic_component), and a short tutorial on fine tuning the behaviour of Treemmer with the pruning options.
Check also treemmer-animate a script by Thomas Hackl to visualize the results of Treemmer: https://github.com/thackl/treemmer-animate
If you use Treemmer please cite:
Menardo et al. (2018). Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity. BMC Bioinformatics 19:164.
https://doi.org/10.1186/s12859-018-2164-8.
Check also treemmer-animate, a script by Thomas Hackl to visualize the "treemming" process: https://github.com/thackl/treemmer-animate
