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Feb 13, 2025
- Merge branch 'dev' · dfbae559
  Laurent Guerard authored 1 month ago
  
  View commits for tag myosoft-imcf-2.2.0 myosoft-imcf-2.2.0
  
  dfbae559
- Fix resizing threshold and add log · a70b76b6
  Laurent Guerard authored 1 month ago
  
  a70b76b6
Feb 12, 2025
- Merge branch 'dev' · 609f9f24
  Laurent Guerard authored 1 month ago
  
  View commits for tag myosoft-imcf-2.1.0 myosoft-imcf-2.1.0
  
  609f9f24
- Add rescaling if image is too big for Cellpose even on Naboo · aa9f80b0
  Laurent Guerard authored 1 month ago
  
  aa9f80b0
- Add compatibility with container files and formatting · 2ef8b8cc
  Laurent Guerard authored 1 month ago
  
  2ef8b8cc
Jan 14, 2025
- Merge branch 'dev' · 8ad0e271
  Laurent Guerard authored 2 months ago
  
  View commits for tag myosoft-imcf-2.0.1 myosoft-imcf-2.0.1
  
  8ad0e271
- Improve speed by hiding the image during processing · d693f307
  Laurent Guerard authored 2 months ago
  
  d693f307
- Refactor fiber typing to use loop · b30da837
  Laurent Guerard authored 2 months ago
  
  b30da837
- Correct typo and clarify python environment · 387af8a7
  Laurent Guerard authored 2 months ago
  
  387af8a7
- Docstring formatting and refactoring · eb3b72d5
  Laurent Guerard authored 2 months ago
  
  eb3b72d5
Jan 08, 2025
- Merge branch 'cellpose_rewrite' · fedca541
  Laurent Guerard authored 2 months ago
  
  fedca541
- Format code · 06c407b9
  Laurent Guerard authored 2 months ago
  
  06c407b9
- Use __main__ · d112f2ec
  Laurent Guerard authored 2 months ago
  
  d112f2ec
- Add option to do batch · 0985d669
  Laurent Guerard authored 2 months ago
  
  0985d669
- Remove some filtering measurements and change order of input and imports · c7e1cb93
  Laurent Guerard authored 2 months ago
  
  c7e1cb93
- Add background correction method · 948a18cc
  Laurent Guerard authored 2 months ago
  
  948a18cc
- Update docstrings · 5f704ad5
  Laurent Guerard authored 2 months ago
  
  5f704ad5
- Update README adding links and replacing Weka by Cellpose · 5ff4fd6c
  Laurent Guerard authored 2 months ago
  
  5ff4fd6c
Dec 11, 2024
- Re add preprocessing · 58b620ab
  Laurent Guerard authored 3 months ago
  
  58b620ab
- WIP · 8c384c68
  Laurent Guerard authored 3 months ago
  
  Script is working but segmentation results aren't perfect, maybe keeping the pre processing step is needed. To continue
  8c384c68
Feb 03, 2023
- fix bug that expected a certain channel sequence · 7003049f
  Kai Schleicher authored 2 years ago
  
  changed result table column and file naming accordingly
  7003049f
Apr 19, 2022
- Add Zenodo DOI badge · 0432dccf
  Niko Ehrenfeuchter authored 2 years ago
  
  0432dccf
- Markdown formatting and conventions · ac3d3e7a
  Niko Ehrenfeuchter authored 2 years ago
  
  ac3d3e7a
Mar 07, 2022
- add classifiers .model files · cb46705f
  Kai Schleicher authored 3 years ago
  
  View commits for tag myosoft-imcf-1.0.0 myosoft-imcf-1.0.0
  
  cb46705f
Nov 10, 2021
- Merge branch 'fix-path-handling' into 'master' · 32f0b5b5
  Kai Schleicher authored 3 years ago
  
  more robust file naming and path handling See merge request !1
  32f0b5b5
- more robust file naming and path handling · 49a31d70
  Kai Schleicher authored 3 years ago
  
  49a31d70
Nov 19, 2020
- updates readme including informaion on script 2a · bff0bbbf
  Kai Schleicher authored 4 years ago
  
  bff0bbbf
- feature: find_nuclei function uses much more sensitive threshold method · 2a8c420f
  Kai Schleicher authored 4 years ago
  
  2a8c420f
Nov 18, 2020
- fix: fixes a bug when fetching the resultstable · f9a787e3
  Kai Schleicher authored 4 years ago
  
  f9a787e3
Nov 06, 2020
- Add LICENSE · 0cfdb1d6
  Kai Schleicher authored 4 years ago
  
  0cfdb1d6
- fix: fixed typo in folder naming · 1138b3a5
  Kai Schleicher authored 4 years ago
  
  1138b3a5
Nov 05, 2020
- renamed files according to execution sequence · 10985720
  Kai Schleicher authored 4 years ago
  
  10985720
- initial commit · 5af5c816
  Kai Schleicher authored 4 years ago
  
  5af5c816
- feature: save selected rois, reports manual threshold, removes unnecessary function · f4384868
  Kai Schleicher authored 4 years ago
  
  f4384868
- fix: fixes a bug, now reports manual threshold · 63b610b1
  Kai Schleicher authored 4 years ago
  
  63b610b1
Nov 03, 2020
- a ziped version of the Classifiers is not needed · ed6b58fa
  Kai Schleicher authored 4 years ago
  
  ed6b58fa
- each script writes its result into its own specific folder · 178666c9
  Kai Schleicher authored 4 years ago
  
  178666c9
Oct 13, 2020
- rename: renames files to indicate order of execution · e86ee6a8
  Kai Schleicher authored 4 years ago
  
  e86ee6a8
Oct 12, 2020
- feature: accepts any roi-set and only searches for central nuclei · 84fad588
  Kai Schleicher authored 4 years ago
  
  84fad588
- fix: removes unused function · 8ca6ed3a
  Kai Schleicher authored 4 years ago
  
  8ca6ed3a