Commits · master · imcf / myosoft-imcf · GitLab

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Apr 29, 2025
- Formatting and correction · 9c2ad26f
  Laurent Guerard authored 4 hours ago
  
  9c2ad26f
- Switch to python module approach · f1996747
  Laurent Guerard authored 4 hours ago
  
  f1996747
- Add method for measuring mean intensity in all fibers · 0bf83759
  Laurent Guerard authored 4 hours ago
  
  0bf83759
- Refactor script 2c to use `imcflibs` · c4deda24
  Laurent Guerard authored 4 hours ago
  
  c4deda24
- Make the output dir input not mandatory · 02a7a4ea
  Laurent Guerard authored 4 hours ago
  
  02a7a4ea
- Refactor script 1 to use `imcflibs` · ce7465fd
  Laurent Guerard authored 4 hours ago
  
  ce7465fd
Apr 25, 2025
- Remove precision option, return all decimal places instead · bef9e7c0
  Kai Schleicher authored 4 days ago
  
  bef9e7c0
- Remove whitespace · 2ecdce18
  Kai Schleicher authored 4 days ago
  
  2ecdce18
- Reorganize measurement options · dab2fd12
  Kai Schleicher authored 4 days ago
  
  dab2fd12
- Correct parameter mix-up and return floats instead of int · 7b03f21e
  Kai Schleicher authored 4 days ago
  
  7b03f21e
- Update function for newest version of TrackMate · e9a9b808
  Kai Schleicher authored 4 days ago
  
  e9a9b808
- Add optional calibration parameter · 312bc8e7
  Kai Schleicher authored 4 days ago
  
  312bc8e7
Apr 23, 2025
- Calculate instead of measure the number of DAPI negative spots · 58644cd3
  Kai Schleicher authored 6 days ago
  
  58644cd3
Apr 22, 2025
- Correct typo · 42a3af34
  Kai Schleicher authored 1 week ago
  
  42a3af34
- Update user on progress · 660fdfb4
  Kai Schleicher authored 1 week ago
  
  660fdfb4
- Clear ROI manager before adding and converting ROIs · 0e76f6e8
  Kai Schleicher authored 1 week ago
  
  0e76f6e8
- remove obsolete TODO · f500afb7
  Kai Schleicher authored 1 week ago
  
  f500afb7
- Add and use function to measure shape features · 449e8420
  Kai Schleicher authored 1 week ago
  
  449e8420
- Change to work with older versions of TrackMate · 5f9d8db0
  Kai Schleicher authored 1 week ago
  
  5f9d8db0
- Update default values for current user · ea0aab15
  Kai Schleicher authored 1 week ago
  
  ea0aab15
Apr 16, 2025
- Remove GUI message about ROI expansion · 10ec2f14
  Kai Schleicher authored 1 week ago
  
  10ec2f14
- Add spots_in_fibers description to README · a01d4d7b
  Kai Schleicher authored 1 week ago
  
  a01d4d7b
- Remove unnecessary function, its use, import and prints · d4b365d8
  Kai Schleicher authored 1 week ago
  
  Roi enlargement is not needed when using Cellpose for fiber detection
  d4b365d8
- Merge branch 'spots-in-fibers' into 'master' · e4613605
  Kai Schleicher authored 1 week ago
  
  Initial commit See merge request !2
  e4613605
- Pass RoiManager to functions · 5147222e
  Kai Schleicher authored 1 week ago
  
  5147222e
- Remove unused line · 1725ac7f
  Kai Schleicher authored 1 week ago
  
  1725ac7f
- Remove RoiManager import, get from script parameter instead. · 2c6afe8e
  Kai Schleicher authored 1 week ago
  
  2c6afe8e
- Remove unused function, its execution and associated import · d34dc6c3
  Kai Schleicher authored 1 week ago
  
  d34dc6c3
- Merge branch 'spots-in-fibers' of... · 0b133811
  Kai Schleicher authored 1 week ago
  
  Merge branch 'spots-in-fibers' of https://git.scicore.unibas.ch/imcf/myosoft-imcf into spots-in-fibers
  0b133811
- Adapt to new function · f1bac837
  Kai Schleicher authored 1 week ago
  
  f1bac837
- Adapt to new function · 06b45e9a
  Kai Schleicher authored 1 week ago
  
  06b45e9a
- Remove unused function and imports · b0af8759
  Kai Schleicher authored 1 week ago
  
  b0af8759
- Remove unused function and imports · e3e5ee76
  Kai Schleicher authored 1 week ago
  
  e3e5ee76
- Add TODO · fa02df72
  Kai Schleicher authored 1 week ago
  
  fa02df72
- Remove unnecessary semicolon · f21b7d89
  Kai Schleicher authored 1 week ago
  
  f21b7d89
Apr 15, 2025
- Run Garbage Collector at the end of the script · f202930e
  Kai Schleicher authored 2 weeks ago
  
  f202930e
- Add missing spot diameter parameter to function · 352cb1c9
  Kai Schleicher authored 2 weeks ago
  
  352cb1c9
- set default spot diameter to 0.3 · f1669c5c
  Kai Schleicher authored 2 weeks ago
  
  f1669c5c
- Change spot label ID painting method · 34beb9c2
  Kai Schleicher authored 2 weeks ago
  
  34beb9c2
- Fix syntax error · 80ed315b
  Kai Schleicher authored 2 weeks ago
  
  80ed315b