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Apr 16, 2025
- Remove GUI message about ROI expansion · 10ec2f14
  Kai Schleicher authored 1 day ago
  
  10ec2f14
- Add spots_in_fibers description to README · a01d4d7b
  Kai Schleicher authored 1 day ago
  
  a01d4d7b
- Remove unnecessary function, its use, import and prints · d4b365d8
  Kai Schleicher authored 1 day ago
  
  Roi enlargement is not needed when using Cellpose for fiber detection
  d4b365d8
- Merge branch 'spots-in-fibers' into 'master' · e4613605
  Kai Schleicher authored 1 day ago
  
  Initial commit See merge request !2
  e4613605
- Pass RoiManager to functions · 5147222e
  Kai Schleicher authored 1 day ago
  
  5147222e
- Remove unused line · 1725ac7f
  Kai Schleicher authored 1 day ago
  
  1725ac7f
- Remove RoiManager import, get from script parameter instead. · 2c6afe8e
  Kai Schleicher authored 1 day ago
  
  2c6afe8e
- Remove unused function, its execution and associated import · d34dc6c3
  Kai Schleicher authored 1 day ago
  
  d34dc6c3
- Merge branch 'spots-in-fibers' of... · 0b133811
  Kai Schleicher authored 1 day ago
  
  Merge branch 'spots-in-fibers' of https://git.scicore.unibas.ch/imcf/myosoft-imcf into spots-in-fibers
  0b133811
- Adapt to new function · f1bac837
  Kai Schleicher authored 1 day ago
  
  f1bac837
- Adapt to new function · 06b45e9a
  Kai Schleicher authored 1 day ago
  
  06b45e9a
- Remove unused function and imports · b0af8759
  Kai Schleicher authored 1 day ago
  
  b0af8759
- Remove unused function and imports · e3e5ee76
  Kai Schleicher authored 1 day ago
  
  e3e5ee76
- Add TODO · fa02df72
  Kai Schleicher authored 1 day ago
  
  fa02df72
- Remove unnecessary semicolon · f21b7d89
  Kai Schleicher authored 1 day ago
  
  f21b7d89
Apr 15, 2025
- Run Garbage Collector at the end of the script · f202930e
  Kai Schleicher authored 2 days ago
  
  f202930e
- Add missing spot diameter parameter to function · 352cb1c9
  Kai Schleicher authored 2 days ago
  
  352cb1c9
- set default spot diameter to 0.3 · f1669c5c
  Kai Schleicher authored 2 days ago
  
  f1669c5c
- Change spot label ID painting method · 34beb9c2
  Kai Schleicher authored 2 days ago
  
  34beb9c2
- Fix syntax error · 80ed315b
  Kai Schleicher authored 2 days ago
  
  80ed315b
- Remove unused functions and imports · d5982750
  Kai Schleicher authored 2 days ago
  
  d5982750
- Add minimun spot diameter as parameter · 48234c5b
  Kai Schleicher authored 2 days ago
  
  48234c5b
- Adapt to api change in trackmate · d6ed724d
  Kai Schleicher authored 2 days ago
  
  d6ed724d
Apr 14, 2025
- Precises comment · 811cdd74
  Kai Schleicher authored 3 days ago
  
  811cdd74
- Do not show intermediate image · db261db2
  Kai Schleicher authored 3 days ago
  
  db261db2
- Remove sum projection as data is a 2D MIP · 106d690d
  Kai Schleicher authored 3 days ago
  
  106d690d
- Don't use z-slice option, input is a MIP · 9a094bcc
  Kai Schleicher authored 3 days ago
  
  9a094bcc
- Create Labelimage from ij roiset · f6b804c8
  Kai Schleicher authored 3 days ago
  
  f6b804c8
- Get path to ij roiset from GUI · 005655c7
  Kai Schleicher authored 3 days ago
  
  005655c7
- Add function to convert ijrois to labelimage · d8310623
  Kai Schleicher authored 3 days ago
  
  d8310623
- Initial commit · c32ebcbe
  Kai Schleicher authored 3 days ago
  
  Mainly copied from spots-in-fibers.py of imcftodo-1089
  c32ebcbe
Feb 13, 2025
- Merge branch 'dev' · dfbae559
  Laurent Guerard authored 2 months ago
  
  View commits for tag myosoft-imcf-2.2.0 myosoft-imcf-2.2.0
  
  dfbae559
- Fix resizing threshold and add log · a70b76b6
  Laurent Guerard authored 2 months ago
  
  a70b76b6
Feb 12, 2025
- Merge branch 'dev' · 609f9f24
  Laurent Guerard authored 2 months ago
  
  View commits for tag myosoft-imcf-2.1.0 myosoft-imcf-2.1.0
  
  609f9f24
- Add rescaling if image is too big for Cellpose even on Naboo · aa9f80b0
  Laurent Guerard authored 2 months ago
  
  aa9f80b0
- Add compatibility with container files and formatting · 2ef8b8cc
  Laurent Guerard authored 2 months ago
  
  2ef8b8cc
Jan 14, 2025
- Merge branch 'dev' · 8ad0e271
  Laurent Guerard authored 3 months ago
  
  View commits for tag myosoft-imcf-2.0.1 myosoft-imcf-2.0.1
  
  8ad0e271
- Improve speed by hiding the image during processing · d693f307
  Laurent Guerard authored 3 months ago
  
  d693f307
- Refactor fiber typing to use loop · b30da837
  Laurent Guerard authored 3 months ago
  
  b30da837
- Correct typo and clarify python environment · 387af8a7
  Laurent Guerard authored 3 months ago
  
  387af8a7