- Apr 18, 2018
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Rafal Gumienny authored
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- Nov 02, 2017
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Gerardo Tauriello authored
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- Oct 20, 2017
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Gerardo Tauriello authored
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- Jul 07, 2017
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Gerardo Tauriello authored
This also enabled test_cleanup, test_nonstandard and test_aligntoseqres which were previously skipped with 'make check' indep. of compound lib availability (simply because unittests are launched with 'python' and not with 'ost').
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- Jul 04, 2017
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Studer Gabriel authored
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- Apr 07, 2017
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Gerardo Tauriello authored
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- Apr 05, 2017
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Gerardo Tauriello authored
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- Jan 23, 2017
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Gerardo Tauriello authored
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Gerardo Tauriello authored
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- Nov 16, 2016
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Gerardo Tauriello authored
- ProfileColumn.HHblitsNullModel as extra fixed null model - ProfileHandle.AddColumn method now adds a character to the sequence - ProfileHandle has a default null model (HHblits) always set - ProfileHandle attributes sequence and null_model are now read-write (replaced SetSequence, SetNullModel)
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- Nov 15, 2016
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Studer Gabriel authored
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- Nov 11, 2016
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Studer Gabriel authored
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Studer Gabriel authored
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- Nov 09, 2016
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Gerardo Tauriello authored
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- Sep 25, 2016
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Studer Gabriel authored
this pops up as warning when compiling with a super new gcc (6.2)
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- Jun 24, 2016
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- Jun 23, 2016
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Gerardo Tauriello authored
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Gerardo Tauriello authored
The code is included in the seq.alg module and it is documented (with an example) in seqalg.rst. The main new functions are: - clip_start = seq.alg.ClipAlignment(aln) - d_map = seq.alg.CreateDistanceMap(aln) - var_map = seq.alg.CreateVarianceMap(d_map) - dist_to_mean = seq.alg.CreateDist2Mean(d_map)
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- May 13, 2016
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BIOPZ-Johner Niklaus authored
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- Feb 29, 2016
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Gerardo Tauriello authored
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- Feb 10, 2016
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Gerardo Tauriello authored
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- Feb 09, 2016
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Gerardo Tauriello authored
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Gerardo Tauriello authored
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- Dec 17, 2015
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Studer Gabriel authored
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- Nov 30, 2015
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Studer Gabriel authored
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- Nov 19, 2015
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Studer Gabriel authored
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- Sep 25, 2015
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BIOPZ-Johner Niklaus authored
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BIOPZ-Johner Niklaus authored
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- Sep 01, 2015
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Bienchen authored
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- Aug 31, 2015
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Studer Gabriel authored
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- Aug 30, 2015
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Studer Gabriel authored
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Studer Gabriel authored
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- Aug 24, 2015
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Studer Gabriel authored
This allows the easy usage of the alignment algorithms on the c-level. The storage to the info object has been removed.
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- Aug 21, 2015
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Studer Gabriel authored
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Studer Gabriel authored
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Studer Gabriel authored
streaming down the hmms in a compressed format with limited accuracy to save memory
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Studer Gabriel authored
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- May 18, 2015
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Studer Gabriel authored
export them to Python
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- Mar 19, 2015
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Bienchen authored
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- Mar 17, 2015
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Studer Gabriel authored
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