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Commit 0d35e6e1 authored by Iris Mestres Pascual's avatar Iris Mestres Pascual Committed by Alex Kanitz
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Delete config_quantify.yaml

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1 merge request!20refactor: merge prepare, map & quantify workflows
This commit is part of merge request !20. Comments created here will be created in the context of that merge request.
---
#### GLOBAL PARAMETERS ####
# Directories
# Usually there is no need to change these
output_dir: "results"
scripts_dir: "../scripts"
local_log: "logs/local"
cluster_log: "logs/cluster"
# Types of miRNAs to quantify
#mir_list: ["miRNA", "miRNA_primary_transcript", "isomirs"]
mir_list: ["miRNA", "miRNA_primary_transcript"]
# Resources: miR annotations, chromosome name mappings
# All of these are produced by the "prepare" workflow
mirnas_anno: "results/homo_sapiens/chrY/mirna_filtered.bed"
isomirs_anno: "results/homo_sapiens/chrY/isomirs_annotation.bed"
# Inputs information
input_dir: "results"
sample: ["test_lib"] # put all samples, separated by comma
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