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<title>6->0</title>
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<title>9->0</title>
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<title>10->0</title>
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<!-- 11 -->
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<title>11->0</title>
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<title>12->0</title>
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<title>16->1</title>
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<title>17</title>
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<!-- 20->1 -->
<g id="edge20" class="edge">
<title>20->1</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1265.3906,-159.0123C1109.806,-149.7276 644.9987,-121.2095 578,-108 575.9592,-107.5976 573.8889,-107.1426 571.807,-106.6461"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="572.6115,-103.2386 562.0487,-104.0619 570.8195,-110.0054 572.6115,-103.2386"/>
<!-- 21 -->
<g id="node22" class="node">
<title>21</title>
<path fill="none" stroke="#d8bc56" stroke-width="2" d="M119.5,-180C119.5,-180 26.5,-180 26.5,-180 20.5,-180 14.5,-174 14.5,-168 14.5,-168 14.5,-156 14.5,-156 14.5,-150 20.5,-144 26.5,-144 26.5,-144 119.5,-144 119.5,-144 125.5,-144 131.5,-150 131.5,-156 131.5,-156 131.5,-168 131.5,-168 131.5,-174 125.5,-180 119.5,-180"/>
<text text-anchor="middle" x="73" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">prepare_multiqc_config</text>
</g>
<!-- 21->1 -->
<g id="edge21" class="edge">
<title>21->1</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M131.8552,-146.9546C136.6282,-145.8973 141.3872,-144.8968 146,-144 262.7643,-121.3004 401.5988,-103.8369 473.8202,-95.4605"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="474.4477,-98.9115 483.9819,-94.291 473.6473,-91.9574 474.4477,-98.9115"/>
<!-- 22 -->
<g id="node23" class="node">
<title>22</title>
<path fill="none" stroke="#56d0d8" stroke-width="2" d="M863.5,-324C863.5,-324 804.5,-324 804.5,-324 798.5,-324 792.5,-318 792.5,-312 792.5,-312 792.5,-300 792.5,-300 792.5,-294 798.5,-288 804.5,-288 804.5,-288 863.5,-288 863.5,-288 869.5,-288 875.5,-294 875.5,-300 875.5,-300 875.5,-312 875.5,-312 875.5,-318 869.5,-324 863.5,-324"/>
<text text-anchor="middle" x="834" y="-309" font-family="sans" font-size="10.00" fill="#000000">sort_bed_4_big</text>
<text text-anchor="middle" x="834" y="-298" font-family="sans" font-size="10.00" fill="#000000">strand: plus</text>
<title>22->2</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M875.6966,-291.1127C878.8393,-290.043 881.9666,-288.9949 885,-288 927.2127,-274.1553 975.458,-259.5967 1011.0629,-249.0893"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1012.1496,-252.418 1020.7546,-246.2371 1010.1733,-245.7028 1012.1496,-252.418"/>
<g id="node24" class="node">
<title>23</title>
<path fill="none" stroke="#d8a456" stroke-width="2" d="M1642.5,-689C1642.5,-689 1541.5,-689 1541.5,-689 1535.5,-689 1529.5,-683 1529.5,-677 1529.5,-677 1529.5,-660 1529.5,-660 1529.5,-654 1535.5,-648 1541.5,-648 1541.5,-648 1642.5,-648 1642.5,-648 1648.5,-648 1654.5,-654 1654.5,-660 1654.5,-660 1654.5,-677 1654.5,-677 1654.5,-683 1648.5,-689 1642.5,-689"/>
<text text-anchor="middle" x="1592" y="-677" font-family="sans" font-size="10.00" fill="#000000">create_index_star</text>
<text text-anchor="middle" x="1592" y="-666" font-family="sans" font-size="10.00" fill="#000000">index_size: 75</text>
<text text-anchor="middle" x="1592" y="-655" font-family="sans" font-size="10.00" fill="#000000">organism: homo_sapiens</text>
<title>23->2</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1529.2647,-662.8914C1447.2715,-651.724 1314,-618.6995 1314,-522 1314,-522 1314,-522 1314,-450 1314,-374.7785 1320.7475,-338.5023 1265,-288 1214.1895,-241.9702 1180.8059,-271.2363 1115,-252 1114.8997,-251.9707 1114.7993,-251.9413 1114.6988,-251.9118"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1115.7614,-248.5769 1105.1745,-248.9851 1113.7053,-255.2681 1115.7614,-248.5769"/>
<title>23->3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1596.4067,-647.746C1602.0195,-619.4559 1611,-567.1388 1611,-522 1611,-522 1611,-522 1611,-378 1611,-336.6022 1610.281,-322.2312 1587,-288 1579.0101,-276.252 1567.5983,-266.0831 1556.1642,-257.8374"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1558.1141,-254.9307 1547.8831,-252.1781 1554.1645,-260.7101 1558.1141,-254.9307"/>
<title>23->4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1587.5933,-647.746C1581.9805,-619.4559 1573,-567.1388 1573,-522 1573,-522 1573,-522 1573,-378 1573,-337.1184 1580.5776,-319.0635 1554,-288 1550.8089,-284.2703 1503.3012,-266.6145 1464.1029,-252.4922"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1464.9428,-249.075 1454.3483,-248.9885 1462.5765,-255.6629 1464.9428,-249.075"/>
<title>23->5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1605.7981,-647.6529C1622.6674,-620.1007 1649,-569.4869 1649,-522 1649,-522 1649,-522 1649,-378 1649,-336.8829 1636.059,-290.7926 1626.3848,-262.082"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1629.5857,-260.6302 1622.9985,-252.3321 1622.9732,-262.9269 1629.5857,-260.6302"/>
<title>23->6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1654.7827,-658.8174C1767.1466,-639.7043 1991,-592.7486 1991,-522 1991,-522 1991,-522 1991,-378 1991,-337.1184 2001.3742,-316.4335 1972,-288 1908.4126,-226.4488 1860.9503,-271.9703 1769.961,-251.8591"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1770.6786,-248.4317 1760.1347,-249.4697 1769.0246,-255.2335 1770.6786,-248.4317"/>
<title>23->7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1654.8549,-666.0497C1772.5288,-660.7215 2021.2964,-645.744 2100,-612 2157.1131,-587.5128 2207,-584.1412 2207,-522 2207,-522 2207,-522 2207,-378 2207,-335.2408 2198.9045,-322.0192 2173,-288 2164.1613,-276.3925 2152.1551,-266.17 2140.3863,-257.8302"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="2142.1521,-254.7992 2131.9075,-252.0974 2138.2313,-260.5981 2142.1521,-254.7992"/>
<title>23->8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1654.5722,-665.8262C1803.9452,-657.7433 2169,-627.2253 2169,-522 2169,-522 2169,-522 2169,-378 2169,-337.1184 2178.5514,-317.2596 2150,-288 2137.6796,-275.3739 2037.3669,-255.0643 1973.969,-243.2815"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1974.5992,-239.8388 1964.1301,-241.4662 1973.329,-246.7226 1974.5992,-239.8388"/>
<title>23->9</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1654.5465,-661.2631C1734.9056,-651.3308 1869.4672,-632.3736 1915,-612 1973.9236,-585.6348 2029,-586.5532 2029,-522 2029,-522 2029,-522 2029,-378 2029,-335.2408 2026.4006,-317.0232 1995,-288 1955.0799,-251.1023 1928.5477,-267.5591 1871.9735,-252.0222"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1872.8216,-248.6228 1862.2382,-249.1152 1870.8187,-255.3302 1872.8216,-248.6228"/>
<!-- 46 -->
<g id="node47" class="node">
<title>46</title>
<path fill="none" stroke="#d8ac56" stroke-width="2" d="M851.5,-252C851.5,-252 766.5,-252 766.5,-252 760.5,-252 754.5,-246 754.5,-240 754.5,-240 754.5,-228 754.5,-228 754.5,-222 760.5,-216 766.5,-216 766.5,-216 851.5,-216 851.5,-216 857.5,-216 863.5,-222 863.5,-228 863.5,-228 863.5,-240 863.5,-240 863.5,-246 857.5,-252 851.5,-252"/>
<text text-anchor="middle" x="809" y="-237" font-family="sans" font-size="10.00" fill="#000000">create_index_salmon</text>
<text text-anchor="middle" x="809" y="-226" font-family="sans" font-size="10.00" fill="#000000">kmer: 31</text>
<!-- 23->46 -->
<g id="edge82" class="edge">
<title>23->46</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1529.2969,-660.9124C1461.99,-651.7567 1360.4798,-634.717 1329,-612 1291.3574,-584.8357 1276,-568.4205 1276,-522 1276,-522 1276,-522 1276,-450 1276,-375.3916 1289.9296,-335.0168 1232,-288 1218.2595,-276.8479 989.0177,-252.2254 873.8948,-240.4796"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="874.0949,-236.982 863.7921,-239.452 873.3865,-243.946 874.0949,-236.982"/>
<!-- 59 -->
<g id="node60" class="node">
<title>59</title>
<path fill="none" stroke="#d87556" stroke-width="2" d="M692.5,-612C692.5,-612 603.5,-612 603.5,-612 597.5,-612 591.5,-606 591.5,-600 591.5,-600 591.5,-588 591.5,-588 591.5,-582 597.5,-576 603.5,-576 603.5,-576 692.5,-576 692.5,-576 698.5,-576 704.5,-582 704.5,-588 704.5,-588 704.5,-600 704.5,-600 704.5,-606 698.5,-612 692.5,-612"/>
<text text-anchor="middle" x="648" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">pe_map_genome_star</text>
<!-- 23->59 -->
<g id="edge105" class="edge">
<title>23->59</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1529.3305,-663.5542C1359.1495,-650.1236 889.4984,-613.0589 714.6947,-599.2635"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="714.8484,-595.7648 704.604,-598.4672 714.2976,-602.7431 714.8484,-595.7648"/>
<!-- 62 -->
<g id="node63" class="node">
<title>62</title>
<path fill="none" stroke="#5673d8" stroke-width="2" d="M1155.5,-612C1155.5,-612 1082.5,-612 1082.5,-612 1076.5,-612 1070.5,-606 1070.5,-600 1070.5,-600 1070.5,-588 1070.5,-588 1070.5,-582 1076.5,-576 1082.5,-576 1082.5,-576 1155.5,-576 1155.5,-576 1161.5,-576 1167.5,-582 1167.5,-588 1167.5,-588 1167.5,-600 1167.5,-600 1167.5,-606 1161.5,-612 1155.5,-612"/>
<text text-anchor="middle" x="1119" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">map_genome_star</text>
<!-- 23->62 -->
<g id="edge108" class="edge">
<title>23->62</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1529.2628,-659.2735C1455.7936,-648.3807 1330.4597,-629.5246 1223,-612 1208.3059,-609.6037 1192.463,-606.9153 1177.6806,-604.3616"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1178.0944,-600.8812 1167.6433,-602.6204 1176.8979,-607.7782 1178.0944,-600.8812"/>
</g>
<!-- 64 -->
<g id="node65" class="node">
<title>64</title>
<path fill="none" stroke="#70d856" stroke-width="2" d="M1236,-396C1236,-396 1156,-396 1156,-396 1150,-396 1144,-390 1144,-384 1144,-384 1144,-372 1144,-372 1144,-366 1150,-360 1156,-360 1156,-360 1236,-360 1236,-360 1242,-360 1248,-366 1248,-372 1248,-372 1248,-384 1248,-384 1248,-390 1242,-396 1236,-396"/>
<text text-anchor="middle" x="1196" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">generate_alfa_index</text>
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
<title>23->64</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1529.4721,-665.5979C1444.975,-660.4018 1300.4548,-646.6032 1262,-612 1231.2701,-584.3479 1208.9265,-462.0183 1200.1264,-406.0831"/>
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</g>
<!-- 24 -->
<g id="node25" class="node">
<title>24</title>
<path fill="none" stroke="#56d0d8" stroke-width="2" d="M1138.5,-324C1138.5,-324 1079.5,-324 1079.5,-324 1073.5,-324 1067.5,-318 1067.5,-312 1067.5,-312 1067.5,-300 1067.5,-300 1067.5,-294 1073.5,-288 1079.5,-288 1079.5,-288 1138.5,-288 1138.5,-288 1144.5,-288 1150.5,-294 1150.5,-300 1150.5,-300 1150.5,-312 1150.5,-312 1150.5,-318 1144.5,-324 1138.5,-324"/>
<text text-anchor="middle" x="1109" y="-309" font-family="sans" font-size="10.00" fill="#000000">sort_bed_4_big</text>
<text text-anchor="middle" x="1109" y="-298" font-family="sans" font-size="10.00" fill="#000000">strand: plus</text>
</g>
<!-- 24->3 -->
<g id="edge24" class="edge">
<title>24->3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1150.5256,-290.5015C1153.7078,-289.5732 1156.8908,-288.724 1160,-288 1288.8558,-257.9957 1328.9676,-281.5431 1461.766,-251.9822"/>
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</g>
<!-- 25 -->
<g id="node26" class="node">
<title>25</title>
<path fill="none" stroke="#56d0d8" stroke-width="2" d="M1037.5,-324C1037.5,-324 978.5,-324 978.5,-324 972.5,-324 966.5,-318 966.5,-312 966.5,-312 966.5,-300 966.5,-300 966.5,-294 972.5,-288 978.5,-288 978.5,-288 1037.5,-288 1037.5,-288 1043.5,-288 1049.5,-294 1049.5,-300 1049.5,-300 1049.5,-312 1049.5,-312 1049.5,-318 1043.5,-324 1037.5,-324"/>
<text text-anchor="middle" x="1008" y="-309" font-family="sans" font-size="10.00" fill="#000000">sort_bed_4_big</text>
<text text-anchor="middle" x="1008" y="-298" font-family="sans" font-size="10.00" fill="#000000">strand: minus</text>
</g>
<!-- 25->4 -->
<g id="edge26" class="edge">
<title>25->4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1049.5259,-290.5029C1052.7081,-289.5742 1055.8909,-288.7246 1059,-288 1187.4306,-258.0685 1227.4098,-281.4757 1359.7971,-251.9759"/>
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<g id="node27" class="node">
<title>26</title>
<path fill="none" stroke="#56d0d8" stroke-width="2" d="M1388.5,-324C1388.5,-324 1329.5,-324 1329.5,-324 1323.5,-324 1317.5,-318 1317.5,-312 1317.5,-312 1317.5,-300 1317.5,-300 1317.5,-294 1323.5,-288 1329.5,-288 1329.5,-288 1388.5,-288 1388.5,-288 1394.5,-288 1400.5,-294 1400.5,-300 1400.5,-300 1400.5,-312 1400.5,-312 1400.5,-318 1394.5,-324 1388.5,-324"/>
<text text-anchor="middle" x="1359" y="-309" font-family="sans" font-size="10.00" fill="#000000">sort_bed_4_big</text>
<text text-anchor="middle" x="1359" y="-298" font-family="sans" font-size="10.00" fill="#000000">strand: minus</text>
<!-- 26->5 -->
<g id="edge28" class="edge">
<title>26->5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1400.6259,-290.8845C1403.785,-289.8676 1406.9352,-288.8937 1410,-288 1474.8445,-269.09 1495.2813,-271.5233 1563.8171,-252.1738"/>
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<g id="node28" class="node">
<title>27</title>
<path fill="none" stroke="#56d0d8" stroke-width="2" d="M1748.5,-324C1748.5,-324 1689.5,-324 1689.5,-324 1683.5,-324 1677.5,-318 1677.5,-312 1677.5,-312 1677.5,-300 1677.5,-300 1677.5,-294 1683.5,-288 1689.5,-288 1689.5,-288 1748.5,-288 1748.5,-288 1754.5,-288 1760.5,-294 1760.5,-300 1760.5,-300 1760.5,-312 1760.5,-312 1760.5,-318 1754.5,-324 1748.5,-324"/>
<text text-anchor="middle" x="1719" y="-309" font-family="sans" font-size="10.00" fill="#000000">sort_bed_4_big</text>
<text text-anchor="middle" x="1719" y="-298" font-family="sans" font-size="10.00" fill="#000000">strand: plus</text>
<!-- 27->6 -->
<g id="edge30" class="edge">
<title>27->6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1718.7477,-287.8314C1718.6407,-280.131 1718.5135,-270.9743 1718.3947,-262.4166"/>
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<g id="node29" class="node">
<title>28</title>
<path fill="none" stroke="#56d0d8" stroke-width="2" d="M2128.5,-324C2128.5,-324 2069.5,-324 2069.5,-324 2063.5,-324 2057.5,-318 2057.5,-312 2057.5,-312 2057.5,-300 2057.5,-300 2057.5,-294 2063.5,-288 2069.5,-288 2069.5,-288 2128.5,-288 2128.5,-288 2134.5,-288 2140.5,-294 2140.5,-300 2140.5,-300 2140.5,-312 2140.5,-312 2140.5,-318 2134.5,-324 2128.5,-324"/>
<text text-anchor="middle" x="2099" y="-309" font-family="sans" font-size="10.00" fill="#000000">sort_bed_4_big</text>
<text text-anchor="middle" x="2099" y="-298" font-family="sans" font-size="10.00" fill="#000000">strand: plus</text>
<!-- 28->7 -->
<g id="edge32" class="edge">
<title>28->7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M2099,-287.8314C2099,-280.131 2099,-270.9743 2099,-262.4166"/>
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<g id="node30" class="node">
<title>29</title>
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<text text-anchor="middle" x="1921" y="-309" font-family="sans" font-size="10.00" fill="#000000">sort_bed_4_big</text>
<text text-anchor="middle" x="1921" y="-298" font-family="sans" font-size="10.00" fill="#000000">strand: minus</text>
<!-- 29->8 -->
<g id="edge34" class="edge">
<title>29->8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1921.2523,-287.8314C1921.3593,-280.131 1921.4865,-270.9743 1921.6053,-262.4166"/>
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<g id="node31" class="node">
<title>30</title>
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<text text-anchor="middle" x="1820" y="-298" font-family="sans" font-size="10.00" fill="#000000">strand: minus</text>
<!-- 30->9 -->
<g id="edge36" class="edge">
<title>30->9</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1820,-287.8314C1820,-280.131 1820,-270.9743 1820,-262.4166"/>
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<!-- 31 -->
<g id="node32" class="node">
<title>31</title>
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<text text-anchor="middle" x="814" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">pe_quantification_salmon</text>
<!-- 31->10 -->
<g id="edge38" class="edge">
<title>31->10</title>
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</g>
<!-- 31->11 -->
<g id="edge40" class="edge">
<title>31->11</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M814,-143.8314C814,-136.131 814,-126.9743 814,-118.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="817.5001,-118.4132 814,-108.4133 810.5001,-118.4133 817.5001,-118.4132"/>
</g>
<!-- 31->12 -->
<g id="edge42" class="edge">
<title>31->12</title>
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</g>
<!-- 31->13 -->
<g id="edge44" class="edge">
<title>31->13</title>
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<!-- 32 -->
<g id="node33" class="node">
<title>32</title>
<path fill="none" stroke="#56d89a" stroke-width="2" d="M994.5,-180C994.5,-180 907.5,-180 907.5,-180 901.5,-180 895.5,-174 895.5,-168 895.5,-168 895.5,-156 895.5,-156 895.5,-150 901.5,-144 907.5,-144 907.5,-144 994.5,-144 994.5,-144 1000.5,-144 1006.5,-150 1006.5,-156 1006.5,-156 1006.5,-168 1006.5,-168 1006.5,-174 1000.5,-180 994.5,-180"/>
<text text-anchor="middle" x="951" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">quantification_salmon</text>
<!-- 32->10 -->
<g id="edge39" class="edge">
<title>32->10</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M895.1927,-146.143C892.4255,-145.4073 889.683,-144.6892 887,-144 879.3089,-142.0244 797.3125,-122.9762 732.9547,-108.0557"/>
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<!-- 32->11 -->
<g id="edge41" class="edge">
<title>32->11</title>
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</g>
<!-- 32->12 -->
<g id="edge43" class="edge">
<title>32->12</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M958.8226,-143.8314C962.2109,-135.9617 966.2541,-126.5712 970.0076,-117.8533"/>
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</g>
<!-- 32->13 -->
<g id="edge45" class="edge">
<title>32->13</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1002.2145,-143.9243C1030.1025,-134.0815 1064.7906,-121.8386 1094.0627,-111.5073"/>
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<!-- 33 -->
<g id="node34" class="node">
<title>33</title>
<path fill="none" stroke="#56d87b" stroke-width="2" d="M280,-838C280,-838 12,-838 12,-838 6,-838 0,-832 0,-826 0,-826 0,-809 0,-809 0,-803 6,-797 12,-797 12,-797 280,-797 280,-797 286,-797 292,-803 292,-809 292,-809 292,-826 292,-826 292,-832 286,-838 280,-838"/>
<text text-anchor="middle" x="146" y="-826" font-family="sans" font-size="10.00" fill="#000000">start</text>
<text text-anchor="middle" x="146" y="-815" font-family="sans" font-size="10.00" fill="#000000">mate: fq1</text>
<text text-anchor="middle" x="146" y="-804" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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<!-- 33->14 -->
<g id="edge46" class="edge">
<title>33->14</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M145.7231,-796.8743C145.1833,-756.6563 143.9895,-667.7154 143.3776,-622.1329"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="146.8763,-622.0055 143.2423,-612.0534 139.877,-622.0995 146.8763,-622.0055"/>
<!-- 47 -->
<g id="node48" class="node">
<title>47</title>
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<text text-anchor="middle" x="311" y="-740.5" font-family="sans" font-size="10.00" fill="#000000">pe_remove_adapters_cutadapt</text>
<!-- 33->47 -->
<g id="edge83" class="edge">
<title>33->47</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M191.5238,-796.9453C213.3082,-787.1094 239.4294,-775.3152 261.6846,-765.2667"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="263.2881,-768.3829 270.9619,-761.0778 260.4075,-762.0031 263.2881,-768.3829"/>
<g id="node35" class="node">
<title>34</title>
<path fill="none" stroke="#56d87b" stroke-width="2" d="M613,-838C613,-838 333,-838 333,-838 327,-838 321,-832 321,-826 321,-826 321,-809 321,-809 321,-803 327,-797 333,-797 333,-797 613,-797 613,-797 619,-797 625,-803 625,-809 625,-809 625,-826 625,-826 625,-832 619,-838 613,-838"/>
<text text-anchor="middle" x="473" y="-826" font-family="sans" font-size="10.00" fill="#000000">start</text>
<text text-anchor="middle" x="473" y="-815" font-family="sans" font-size="10.00" fill="#000000">mate: fq1</text>
<text text-anchor="middle" x="473" y="-804" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
<!-- 34->15 -->
<g id="edge47" class="edge">
<title>34->15</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M329.5266,-796.9686C284.9644,-787.9893 243.2463,-776.0253 227,-761 209.2185,-744.5548 202.2644,-717.3668 199.5836,-696.7115"/>
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<!-- 49 -->
<g id="node50" class="node">
<title>49</title>
<path fill="none" stroke="#78d856" stroke-width="2" d="M531,-761C531,-761 421,-761 421,-761 415,-761 409,-755 409,-749 409,-749 409,-737 409,-737 409,-731 415,-725 421,-725 421,-725 531,-725 531,-725 537,-725 543,-731 543,-737 543,-737 543,-749 543,-749 543,-755 537,-761 531,-761"/>
<text text-anchor="middle" x="476" y="-740.5" font-family="sans" font-size="10.00" fill="#000000">remove_adapters_cutadapt</text>
<!-- 34->49 -->
<g id="edge85" class="edge">
<title>34->49</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M473.8357,-796.7476C474.1526,-788.8767 474.5192,-779.7743 474.8595,-771.3232"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="478.3655,-771.2414 475.2708,-761.1087 471.3712,-770.9597 478.3655,-771.2414"/>
<g id="node36" class="node">
<title>35</title>
<path fill="none" stroke="#56d87b" stroke-width="2" d="M977,-838C977,-838 709,-838 709,-838 703,-838 697,-832 697,-826 697,-826 697,-809 697,-809 697,-803 703,-797 709,-797 709,-797 977,-797 977,-797 983,-797 989,-803 989,-809 989,-809 989,-826 989,-826 989,-832 983,-838 977,-838"/>
<text text-anchor="middle" x="843" y="-826" font-family="sans" font-size="10.00" fill="#000000">start</text>
<text text-anchor="middle" x="843" y="-815" font-family="sans" font-size="10.00" fill="#000000">mate: fq2</text>
<text text-anchor="middle" x="843" y="-804" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
<!-- 35->16 -->
<g id="edge48" class="edge">
<title>35->16</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M872.5215,-796.9453C885.8403,-787.6719 901.659,-776.658 915.5196,-767.0074"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="917.6501,-769.7888 923.8569,-761.2024 913.6503,-764.0441 917.6501,-769.7888"/>
<!-- 35->47 -->
<g id="edge84" class="edge">
<title>35->47</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M696.9598,-801.5796C610.4044,-791.4705 498.6881,-777.2509 400,-761 398.7313,-760.7911 397.4531,-760.5772 396.1673,-760.3589"/>
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<g id="node37" class="node">
<title>36</title>
<path fill="none" stroke="#d8cb56" stroke-width="2" d="M367,-686.5C367,-686.5 255,-686.5 255,-686.5 249,-686.5 243,-680.5 243,-674.5 243,-674.5 243,-662.5 243,-662.5 243,-656.5 249,-650.5 255,-650.5 255,-650.5 367,-650.5 367,-650.5 373,-650.5 379,-656.5 379,-662.5 379,-662.5 379,-674.5 379,-674.5 379,-680.5 373,-686.5 367,-686.5"/>
<text text-anchor="middle" x="311" y="-666" font-family="sans" font-size="10.00" fill="#000000">pe_remove_polya_cutadapt</text>
<!-- 36->17 -->
<g id="edge49" class="edge">
<title>36->17</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M303.3336,-650.3711C292.496,-623.0553 274,-569.4811 274,-522 274,-522 274,-522 274,-378 274,-337.1184 273.5178,-323.941 293,-288 298.7664,-277.3621 307.2845,-267.446 315.8594,-259.089"/>
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<!-- 36->31 -->
<g id="edge64" class="edge">
<title>36->31</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M294.3551,-650.1517C272.2595,-623.8199 236,-572.8604 236,-522 236,-522 236,-522 236,-306 236,-265.1184 224.3763,-243.0832 255,-216 290.0853,-184.971 628.4308,-185.0087 675,-180 696.2075,-177.719 719.1885,-174.8897 740.2421,-172.1551"/>
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<!-- 36->59 -->
<g id="edge106" class="edge">
<title>36->59</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M379.197,-653.4238C438.1946,-640.3813 522.9861,-621.6366 581.4863,-608.7041"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="582.3565,-612.0963 591.3652,-606.5202 580.8454,-605.2613 582.3565,-612.0963"/>
<!-- 37 -->
<g id="node38" class="node">
<title>37</title>
<path fill="none" stroke="#56a2d8" stroke-width="2" d="M398,-324C398,-324 314,-324 314,-324 308,-324 302,-318 302,-312 302,-312 302,-300 302,-300 302,-294 308,-288 314,-288 314,-288 398,-288 398,-288 404,-288 410,-294 410,-300 410,-300 410,-312 410,-312 410,-318 404,-324 398,-324"/>
<text text-anchor="middle" x="356" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">create_index_kallisto</text>
<!-- 37->17 -->
<g id="edge50" class="edge">
<title>37->17</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M353.7289,-287.8314C352.7664,-280.131 351.6218,-270.9743 350.5521,-262.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="354.0151,-261.9019 349.3017,-252.4133 347.0691,-262.7702 354.0151,-261.9019"/>
<!-- 37->18 -->
<g id="edge52" class="edge">
<title>37->18</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M398.1412,-287.8314C420.4764,-278.2018 448.0936,-266.295 471.671,-256.1299"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="473.3647,-259.2112 481.1619,-252.038 470.5933,-252.7831 473.3647,-259.2112"/>
<g id="node39" class="node">
<title>38</title>
<path fill="none" stroke="#d89556" stroke-width="2" d="M538,-686.5C538,-686.5 442,-686.5 442,-686.5 436,-686.5 430,-680.5 430,-674.5 430,-674.5 430,-662.5 430,-662.5 430,-656.5 436,-650.5 442,-650.5 442,-650.5 538,-650.5 538,-650.5 544,-650.5 550,-656.5 550,-662.5 550,-662.5 550,-674.5 550,-674.5 550,-680.5 544,-686.5 538,-686.5"/>
<text text-anchor="middle" x="490" y="-666" font-family="sans" font-size="10.00" fill="#000000">remove_polya_cutadapt</text>
<!-- 38->18 -->
<g id="edge51" class="edge">
<title>38->18</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M482.9552,-650.314C472.9964,-622.9252 456,-569.2591 456,-522 456,-522 456,-522 456,-450 456,-377.9986 425.9662,-352.97 457,-288 462.589,-276.2993 472.0792,-266.2841 482.147,-258.1706"/>
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<!-- 38->32 -->
<g id="edge66" class="edge">
<title>38->32</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M492.771,-650.0546C498.1542,-618.3368 512.1225,-552.2275 541,-504 615.2326,-380.0261 657.318,-357.5102 784,-288 821.4078,-267.4744 838.286,-276.8109 873,-252 897.3244,-234.6148 919.0558,-208.1546 933.3628,-188.4184"/>
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<!-- 38->62 -->
<g id="edge109" class="edge">
<title>38->62</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M550.0262,-661.3904C670.5706,-647.1129 940.7416,-615.1133 1060.2345,-600.9603"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1060.7723,-604.4212 1070.2912,-599.7692 1059.9489,-597.4697 1060.7723,-604.4212"/>
<!-- 39 -->
<g id="node40" class="node">
<title>39</title>
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<text text-anchor="middle" x="742" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">merge_TIN_scores</text>
<!-- 39->19 -->
<g id="edge53" class="edge">
<title>39->19</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M731.8917,-359.9555C710.6278,-321.9967 661.1724,-233.7127 636.121,-188.9928"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="639.1054,-187.1589 631.1646,-180.1451 632.9984,-190.58 639.1054,-187.1589"/>
<!-- 40 -->
<g id="node41" class="node">
<title>40</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" d="M1216.5,-252C1216.5,-252 1135.5,-252 1135.5,-252 1129.5,-252 1123.5,-246 1123.5,-240 1123.5,-240 1123.5,-228 1123.5,-228 1123.5,-222 1129.5,-216 1135.5,-216 1135.5,-216 1216.5,-216 1216.5,-216 1222.5,-216 1228.5,-222 1228.5,-228 1228.5,-228 1228.5,-240 1228.5,-240 1228.5,-246 1222.5,-252 1216.5,-252"/>
<text text-anchor="middle" x="1176" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc_all_samples</text>
<!-- 40->20 -->
<g id="edge54" class="edge">
<title>40->20</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1211.3279,-215.8314C1229.6493,-206.4089 1252.2102,-194.8062 1271.6895,-184.7883"/>
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<!-- 41 -->
<g id="node42" class="node">
<title>41</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" d="M1339.5,-252C1339.5,-252 1258.5,-252 1258.5,-252 1252.5,-252 1246.5,-246 1246.5,-240 1246.5,-240 1246.5,-228 1246.5,-228 1246.5,-222 1252.5,-216 1258.5,-216 1258.5,-216 1339.5,-216 1339.5,-216 1345.5,-216 1351.5,-222 1351.5,-228 1351.5,-228 1351.5,-240 1351.5,-240 1351.5,-246 1345.5,-252 1339.5,-252"/>
<text text-anchor="middle" x="1299" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc_all_samples</text>
<!-- 41->20 -->
<g id="edge55" class="edge">
<title>41->20</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1303.2898,-215.8314C1305.108,-208.131 1307.2699,-198.9743 1309.2905,-190.4166"/>
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<!-- 42 -->
<g id="node43" class="node">
<title>42</title>
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<text text-anchor="middle" x="913" y="-381" font-family="sans" font-size="10.00" fill="#000000">rename_star_rpm_for_alfa</text>
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<!-- 42->22 -->
<g id="edge56" class="edge">
<title>42->22</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M893.065,-359.8314C883.5217,-351.1337 871.9401,-340.5783 861.5694,-331.1265"/>
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<!-- 42->25 -->
<g id="edge58" class="edge">
<title>42->25</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M936.9725,-359.8314C948.7861,-350.8779 963.1972,-339.9558 975.9435,-330.2955"/>
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<!-- 52 -->
<g id="node53" class="node">
<title>52</title>
<path fill="none" stroke="#5663d8" stroke-width="2" d="M936,-324C936,-324 906,-324 906,-324 900,-324 894,-318 894,-312 894,-312 894,-300 894,-300 894,-294 900,-288 906,-288 906,-288 936,-288 936,-288 942,-288 948,-294 948,-300 948,-300 948,-312 948,-312 948,-318 942,-324 936,-324"/>
<text text-anchor="middle" x="921" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc</text>
<!-- 42->52 -->
<g id="edge92" class="edge">
<title>42->52</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M915.0187,-359.8314C915.8743,-352.131 916.8917,-342.9743 917.8426,-334.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="921.3283,-334.7386 918.9541,-324.4133 914.3711,-333.9656 921.3283,-334.7386"/>
<!-- 43 -->
<g id="node44" class="node">
<title>43</title>
<path fill="none" stroke="#5692d8" stroke-width="2" d="M1114,-396C1114,-396 1008,-396 1008,-396 1002,-396 996,-390 996,-384 996,-384 996,-372 996,-372 996,-366 1002,-360 1008,-360 1008,-360 1114,-360 1114,-360 1120,-360 1126,-366 1126,-372 1126,-372 1126,-384 1126,-384 1126,-390 1120,-396 1114,-396"/>
<text text-anchor="middle" x="1061" y="-381" font-family="sans" font-size="10.00" fill="#000000">rename_star_rpm_for_alfa</text>
<text text-anchor="middle" x="1061" y="-370" font-family="sans" font-size="10.00" fill="#000000">unique: UniqueMultiple</text>
<!-- 43->24 -->
<g id="edge57" class="edge">
<title>43->24</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1073.1124,-359.8314C1078.5281,-351.7079 1085.0242,-341.9637 1090.9921,-333.0118"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1094.0896,-334.6753 1096.7245,-324.4133 1088.2653,-330.7923 1094.0896,-334.6753"/>
<!-- 43->26 -->
<g id="edge59" class="edge">
<title>43->26</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1126.3682,-362.0919C1129.2852,-361.3845 1132.1729,-360.6846 1135,-360 1194.098,-345.689 1261.9881,-329.3347 1307.394,-318.409"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1308.393,-321.7686 1317.2969,-316.0264 1306.7556,-314.9628 1308.393,-321.7686"/>
<!-- 54 -->
<g id="node55" class="node">
<title>54</title>
<path fill="none" stroke="#5663d8" stroke-width="2" d="M1211,-324C1211,-324 1181,-324 1181,-324 1175,-324 1169,-318 1169,-312 1169,-312 1169,-300 1169,-300 1169,-294 1175,-288 1181,-288 1181,-288 1211,-288 1211,-288 1217,-288 1223,-294 1223,-300 1223,-300 1223,-312 1223,-312 1223,-318 1217,-324 1211,-324"/>
<text text-anchor="middle" x="1196" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc</text>
</g>
<!-- 43->54 -->
<title>43->54</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1095.0662,-359.8314C1114.8453,-349.2825 1139.7483,-336.0009 1159.8691,-325.2698"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1161.5652,-328.3319 1168.7417,-320.5378 1158.2711,-322.1555 1161.5652,-328.3319"/>
<!-- 44 -->
<g id="node45" class="node">
<title>44</title>
<path fill="none" stroke="#5692d8" stroke-width="2" d="M1795,-396C1795,-396 1689,-396 1689,-396 1683,-396 1677,-390 1677,-384 1677,-384 1677,-372 1677,-372 1677,-366 1683,-360 1689,-360 1689,-360 1795,-360 1795,-360 1801,-360 1807,-366 1807,-372 1807,-372 1807,-384 1807,-384 1807,-390 1801,-396 1795,-396"/>
<text text-anchor="middle" x="1742" y="-381" font-family="sans" font-size="10.00" fill="#000000">rename_star_rpm_for_alfa</text>
<text text-anchor="middle" x="1742" y="-370" font-family="sans" font-size="10.00" fill="#000000">unique: Unique</text>
<!-- 44->27 -->
<g id="edge60" class="edge">
<title>44->27</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1736.1961,-359.8314C1733.7092,-352.0463 1730.7469,-342.7729 1727.9875,-334.1347"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1731.2591,-332.874 1724.882,-324.4133 1724.591,-335.0041 1731.2591,-332.874"/>
<!-- 44->29 -->
<g id="edge62" class="edge">
<title>44->29</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1787.1693,-359.8314C1812.3511,-349.7024 1843.7968,-337.0538 1869.8783,-326.5629"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1871.2516,-329.7831 1879.2231,-322.8041 1868.6393,-323.2888 1871.2516,-329.7831"/>
</g>
<!-- 53 -->
<g id="node54" class="node">
<title>53</title>
<path fill="none" stroke="#5663d8" stroke-width="2" d="M1461,-324C1461,-324 1431,-324 1431,-324 1425,-324 1419,-318 1419,-312 1419,-312 1419,-300 1419,-300 1419,-294 1425,-288 1431,-288 1431,-288 1461,-288 1461,-288 1467,-288 1473,-294 1473,-300 1473,-300 1473,-312 1473,-312 1473,-318 1467,-324 1461,-324"/>
<text text-anchor="middle" x="1446" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc</text>
</g>
<!-- 44->53 -->
<g id="edge94" class="edge">
<title>44->53</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1676.9062,-369.269C1625.8366,-361.3381 1553.1365,-347.6594 1482.6746,-323.7897"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1483.7943,-320.4736 1473.1996,-320.5126 1481.5062,-327.0891 1483.7943,-320.4736"/>
<!-- 45 -->
<g id="node46" class="node">
<title>45</title>
<path fill="none" stroke="#5692d8" stroke-width="2" d="M1943,-396C1943,-396 1837,-396 1837,-396 1831,-396 1825,-390 1825,-384 1825,-384 1825,-372 1825,-372 1825,-366 1831,-360 1837,-360 1837,-360 1943,-360 1943,-360 1949,-360 1955,-366 1955,-372 1955,-372 1955,-384 1955,-384 1955,-390 1949,-396 1943,-396"/>
<text text-anchor="middle" x="1890" y="-381" font-family="sans" font-size="10.00" fill="#000000">rename_star_rpm_for_alfa</text>
<text text-anchor="middle" x="1890" y="-370" font-family="sans" font-size="10.00" fill="#000000">unique: UniqueMultiple</text>
<!-- 45->28 -->
<g id="edge61" class="edge">
<title>45->28</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1942.4698,-359.9243C1974.6868,-348.8256 2015.7618,-334.6754 2047.7513,-323.655"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="2049.0529,-326.9086 2057.3675,-320.3423 2046.7728,-320.2903 2049.0529,-326.9086"/>
<!-- 45->30 -->
<g id="edge63" class="edge">
<title>45->30</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1872.336,-359.8314C1864.0268,-351.2848 1853.9736,-340.9443 1844.9082,-331.6198"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1847.3821,-329.1435 1837.9018,-324.4133 1842.3631,-334.023 1847.3821,-329.1435"/>
<!-- 55 -->
<g id="node56" class="node">
<title>55</title>
<path fill="none" stroke="#5663d8" stroke-width="2" d="M1533,-324C1533,-324 1503,-324 1503,-324 1497,-324 1491,-318 1491,-312 1491,-312 1491,-300 1491,-300 1491,-294 1497,-288 1503,-288 1503,-288 1533,-288 1533,-288 1539,-288 1545,-294 1545,-300 1545,-300 1545,-312 1545,-312 1545,-318 1539,-324 1533,-324"/>
<text text-anchor="middle" x="1518" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc</text>
<!-- 45->55 -->
<g id="edge98" class="edge">
<title>45->55</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1824.678,-361.8882C1821.7485,-361.2359 1818.8455,-360.6033 1816,-360 1722.5467,-340.1851 1611.6386,-321.2959 1555.1264,-311.9995"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1555.6581,-308.54 1545.2238,-310.3773 1554.5264,-315.448 1555.6581,-308.54"/>
<!-- 46->31 -->
<g id="edge65" class="edge">
<title>46->31</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M810.2617,-215.8314C810.7965,-208.131 811.4323,-198.9743 812.0266,-190.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="815.52,-190.6317 812.7213,-180.4133 808.5368,-190.1467 815.52,-190.6317"/>
<!-- 46->32 -->
<g id="edge67" class="edge">
<title>46->32</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M844.8326,-215.8314C863.4157,-206.4089 886.2989,-194.8062 906.0565,-184.7883"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="907.8427,-187.8069 915.1789,-180.1628 904.677,-181.5635 907.8427,-187.8069"/>
<!-- 47->36 -->
<g id="edge68" class="edge">
<title>47->36</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M311,-724.9656C311,-716.5178 311,-706.2542 311,-696.8064"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="314.5001,-696.6265 311,-686.6265 307.5001,-696.6265 314.5001,-696.6265"/>
<!-- 48 -->
<g id="node49" class="node">
<title>48</title>
<path fill="none" stroke="#d88556" stroke-width="2" d="M415.5,-396C415.5,-396 314.5,-396 314.5,-396 308.5,-396 302.5,-390 302.5,-384 302.5,-384 302.5,-372 302.5,-372 302.5,-366 308.5,-360 314.5,-360 314.5,-360 415.5,-360 415.5,-360 421.5,-360 427.5,-366 427.5,-372 427.5,-372 427.5,-384 427.5,-384 427.5,-390 421.5,-396 415.5,-396"/>
<text text-anchor="middle" x="365" y="-381" font-family="sans" font-size="10.00" fill="#000000">extract_transcriptome</text>
<text text-anchor="middle" x="365" y="-370" font-family="sans" font-size="10.00" fill="#000000">organism: homo_sapiens</text>
<!-- 48->37 -->
<g id="edge69" class="edge">
<title>48->37</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M362.7289,-359.8314C361.7664,-352.131 360.6218,-342.9743 359.5521,-334.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="363.0151,-333.9019 358.3017,-324.4133 356.0691,-334.7702 363.0151,-333.9019"/>
</g>
<!-- 58 -->
<g id="node59" class="node">
<title>58</title>
<path fill="none" stroke="#d85656" stroke-width="2" d="M648.5,-324C648.5,-324 477.5,-324 477.5,-324 471.5,-324 465.5,-318 465.5,-312 465.5,-312 465.5,-300 465.5,-300 465.5,-294 471.5,-288 477.5,-288 477.5,-288 648.5,-288 648.5,-288 654.5,-288 660.5,-294 660.5,-300 660.5,-300 660.5,-312 660.5,-312 660.5,-318 654.5,-324 648.5,-324"/>
<text text-anchor="middle" x="563" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">concatenate_transcriptome_and_genome</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M414.7082,-359.9243C441.7759,-350.0815 475.4439,-337.8386 503.8549,-327.5073"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="505.0695,-330.7899 513.2714,-324.0831 502.6773,-324.2114 505.0695,-330.7899"/>
<!-- 49->38 -->
<g id="edge70" class="edge">
<title>49->38</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M479.389,-724.9656C480.9936,-716.427 482.9468,-706.0333 484.7379,-696.502"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="488.1865,-697.1009 486.5937,-686.6265 481.3069,-695.8081 488.1865,-697.1009"/>
<!-- 50 -->
<g id="node51" class="node">
<title>50</title>
<path fill="none" stroke="#97d856" stroke-width="2" d="M803,-468C803,-468 715,-468 715,-468 709,-468 703,-462 703,-456 703,-456 703,-444 703,-444 703,-438 709,-432 715,-432 715,-432 803,-432 803,-432 809,-432 815,-438 815,-444 815,-444 815,-456 815,-456 815,-462 809,-468 803,-468"/>
<text text-anchor="middle" x="759" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">calculate_TIN_scores</text>
<!-- 50->39 -->
<g id="edge71" class="edge">
<title>50->39</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M754.7102,-431.8314C752.892,-424.131 750.7301,-414.9743 748.7095,-406.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="752.0519,-405.3414 746.3476,-396.4133 745.2392,-406.95 752.0519,-405.3414"/>
<!-- 51 -->
<g id="node52" class="node">
<title>51</title>
<path fill="none" stroke="#97d856" stroke-width="2" d="M940,-468C940,-468 852,-468 852,-468 846,-468 840,-462 840,-456 840,-456 840,-444 840,-444 840,-438 846,-432 852,-432 852,-432 940,-432 940,-432 946,-432 952,-438 952,-444 952,-444 952,-456 952,-456 952,-462 946,-468 940,-468"/>
<text text-anchor="middle" x="896" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">calculate_TIN_scores</text>
<!-- 51->39 -->
<g id="edge72" class="edge">
<title>51->39</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M857.1393,-431.8314C836.7258,-422.2874 811.5277,-410.5065 789.914,-400.4013"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="791.1225,-397.1027 780.5813,-396.038 788.1577,-403.4439 791.1225,-397.1027"/>
<!-- 52->40 -->
<g id="edge73" class="edge">
<title>52->40</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M948.183,-291.9244C951.4459,-290.4898 954.7672,-289.1428 958,-288 1022.2046,-265.3037 1043.3295,-269.4958 1113.5294,-252.0103"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1114.466,-255.3836 1123.2901,-249.5196 1112.7351,-248.6009 1114.466,-255.3836"/>
<!-- 53->40 -->
<g id="edge74" class="edge">
<title>53->40</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1418.7988,-291.492C1415.8727,-290.2059 1412.9037,-289.0108 1410,-288 1339.2656,-263.377 1315.708,-270.2554 1238.8527,-252.0692"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1239.2353,-248.5601 1228.691,-249.5937 1237.5785,-255.3612 1239.2353,-248.5601"/>
<!-- 54->41 -->
<g id="edge75" class="edge">
<title>54->41</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1221.9912,-287.8314C1234.9216,-278.7927 1250.7222,-267.7476 1264.6383,-258.0198"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1266.8263,-260.7608 1273.0171,-252.1628 1262.8157,-255.0235 1266.8263,-260.7608"/>
<!-- 55->41 -->
<g id="edge76" class="edge">
<title>55->41</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1490.7102,-291.731C1487.8013,-290.3983 1484.8606,-289.127 1482,-288 1476.1188,-285.683 1412.1748,-266.9263 1361.5089,-252.161"/>
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<!-- 56 -->
<g id="node57" class="node">
<title>56</title>
<path fill="none" stroke="#56d85b" stroke-width="2" d="M666.5,-468C666.5,-468 635.5,-468 635.5,-468 629.5,-468 623.5,-462 623.5,-456 623.5,-456 623.5,-444 623.5,-444 623.5,-438 629.5,-432 635.5,-432 635.5,-432 666.5,-432 666.5,-432 672.5,-432 678.5,-438 678.5,-444 678.5,-444 678.5,-456 678.5,-456 678.5,-462 672.5,-468 666.5,-468"/>
<text text-anchor="middle" x="651" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">star_rpm</text>
<!-- 56->42 -->
<g id="edge77" class="edge">
<title>56->42</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M678.5183,-437.7414C683.6136,-435.6837 688.9283,-433.6756 694,-432 740.9876,-416.4759 794.95,-403.1199 837.5518,-393.5743"/>
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<!-- 56->43 -->
<g id="edge78" class="edge">
<title>56->43</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M678.8332,-437.054C683.8031,-435.1174 688.9937,-433.3283 694,-432 817.7177,-399.1748 856.0627,-418.5426 985.8035,-396.0819"/>
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</g>
<!-- 57 -->
<g id="node58" class="node">
<title>57</title>
<path fill="none" stroke="#56d85b" stroke-width="2" d="M1738.5,-468C1738.5,-468 1707.5,-468 1707.5,-468 1701.5,-468 1695.5,-462 1695.5,-456 1695.5,-456 1695.5,-444 1695.5,-444 1695.5,-438 1701.5,-432 1707.5,-432 1707.5,-432 1738.5,-432 1738.5,-432 1744.5,-432 1750.5,-438 1750.5,-444 1750.5,-444 1750.5,-456 1750.5,-456 1750.5,-462 1744.5,-468 1738.5,-468"/>
<text text-anchor="middle" x="1723" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">star_rpm</text>
<!-- 57->44 -->
<g id="edge79" class="edge">
<title>57->44</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1727.7945,-431.8314C1729.8489,-424.0463 1732.296,-414.7729 1734.5756,-406.1347"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1737.9735,-406.9753 1737.1409,-396.4133 1731.2052,-405.1892 1737.9735,-406.9753"/>
<!-- 57->45 -->
<g id="edge80" class="edge">
<title>57->45</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1750.5767,-438.1107C1774.4848,-427.803 1809.7133,-412.6146 1838.7762,-400.0845"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1840.1762,-403.2924 1847.9734,-396.1193 1837.4048,-396.8644 1840.1762,-403.2924"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M624.7587,-287.9243C661.3404,-277.2174 707.6252,-263.6707 744.6517,-252.8337"/>
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<title>59->50</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M698.7632,-575.972C715.625,-567.5512 732.9077,-555.8107 744,-540 756.5305,-522.1393 759.9196,-497.4452 760.3767,-478.441"/>
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<!-- 59->56 -->
<g id="edge100" class="edge">
<title>59->56</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M593.7405,-575.9128C577.4149,-567.642 561.3643,-556.0115 552,-540 543.9225,-526.1886 543.8326,-517.7584 552,-504 565.3196,-481.5625 591.6034,-467.8515 613.7425,-459.8621"/>
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<!-- 60 -->
<g id="node61" class="node">
<title>60</title>
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<text text-anchor="middle" x="648" y="-514" font-family="sans" font-size="10.00" fill="#000000">seqmode: pe</text>
<!-- 59->60 -->
<g id="edge107" class="edge">
<title>59->60</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M648,-575.8314C648,-568.131 648,-558.9743 648,-550.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="651.5001,-550.4132 648,-540.4133 644.5001,-550.4133 651.5001,-550.4132"/>
<!-- 60->50 -->
<g id="edge87" class="edge">
<title>60->50</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M676.01,-503.8314C690.0761,-494.7074 707.294,-483.539 722.3933,-473.7449"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="724.514,-476.5412 730.999,-468.1628 720.7047,-470.6684 724.514,-476.5412"/>
<title>60->56</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M648.757,-503.8314C649.0779,-496.131 649.4594,-486.9743 649.816,-478.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="653.3133,-478.5503 650.2328,-468.4133 646.3194,-478.2589 653.3133,-478.5503"/>
<!-- 61 -->
<g id="node62" class="node">
<title>61</title>
<path fill="none" stroke="#56b1d8" stroke-width="2" d="M924.5,-540C924.5,-540 803.5,-540 803.5,-540 797.5,-540 791.5,-534 791.5,-528 791.5,-528 791.5,-516 791.5,-516 791.5,-510 797.5,-504 803.5,-504 803.5,-504 924.5,-504 924.5,-504 930.5,-504 936.5,-510 936.5,-516 936.5,-516 936.5,-528 936.5,-528 936.5,-534 930.5,-540 924.5,-540"/>
<text text-anchor="middle" x="864" y="-519.5" font-family="sans" font-size="10.00" fill="#000000">extract_transcripts_as_bed12</text>
<!-- 61->50 -->
<g id="edge88" class="edge">
<title>61->50</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M837.5041,-503.8314C824.3226,-494.7927 808.2153,-483.7476 794.0289,-474.0198"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="795.7141,-470.9316 785.4875,-468.1628 791.7554,-476.7047 795.7141,-470.9316"/>
<!-- 61->51 -->
<g id="edge91" class="edge">
<title>61->51</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M872.075,-503.8314C875.6102,-495.8771 879.836,-486.369 883.7456,-477.5723"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="886.9532,-478.9729 887.8163,-468.4133 880.5565,-476.1299 886.9532,-478.9729"/>
<!-- 62->51 -->
<g id="edge89" class="edge">
<title>62->51</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1084.7298,-575.8522C1066.1832,-565.7506 1043.0337,-552.6847 1023,-540 989.769,-518.9591 953.2729,-492.7519 927.966,-474.0541"/>
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</g>
<!-- 62->57 -->
<g id="edge102" class="edge">
<title>62->57</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1167.6613,-582.3986C1284.8862,-554.451 1580.9513,-483.8659 1685.6277,-458.91"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1686.5187,-462.2957 1695.4344,-456.5719 1684.8953,-455.4865 1686.5187,-462.2957"/>
</g>
<!-- 63 -->
<g id="node64" class="node">
<title>63</title>
<path fill="none" stroke="#b6d856" stroke-width="2" d="M1194,-540C1194,-540 1044,-540 1044,-540 1038,-540 1032,-534 1032,-528 1032,-528 1032,-516 1032,-516 1032,-510 1038,-504 1044,-504 1044,-504 1194,-504 1194,-504 1200,-504 1206,-510 1206,-516 1206,-516 1206,-528 1206,-528 1206,-534 1200,-540 1194,-540"/>
<text text-anchor="middle" x="1119" y="-525" font-family="sans" font-size="10.00" fill="#000000">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1119" y="-514" font-family="sans" font-size="10.00" fill="#000000">seqmode: se</text>
</g>
<!-- 62->63 -->
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
<title>62->63</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1119,-575.8314C1119,-568.131 1119,-558.9743 1119,-550.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1122.5001,-550.4132 1119,-540.4133 1115.5001,-550.4133 1122.5001,-550.4132"/>
</g>
<!-- 63->51 -->
<g id="edge90" class="edge">
<title>63->51</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1063.0155,-503.9243C1032.265,-493.9959 993.9512,-481.6255 961.7795,-471.2382"/>
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</g>
<!-- 63->57 -->
<g id="edge103" class="edge">
<title>63->57</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1206.1817,-511.6075C1340.0089,-495.6546 1590.5239,-465.7919 1685.3387,-454.4894"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1685.8156,-457.9574 1695.331,-453.2983 1684.987,-451.0067 1685.8156,-457.9574"/>
</g>
<!-- 64->52 -->
<g id="edge93" class="edge">
<title>64->52</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1143.8376,-362.286C1140.8545,-361.4877 1137.8931,-360.7196 1135,-360 1057.0966,-340.622 1034.0307,-349.7637 958,-324 957.8985,-323.9656 957.797,-323.931 957.6953,-323.8962"/>
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</g>
<!-- 64->53 -->
<g id="edge95" class="edge">
<title>64->53</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1248.4109,-368.0884C1290.1037,-359.4629 1349.8512,-345.4486 1409.231,-323.9084"/>
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</g>
<!-- 64->54 -->
<g id="edge97" class="edge">
<title>64->54</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1196,-359.8314C1196,-352.131 1196,-342.9743 1196,-334.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1199.5001,-334.4132 1196,-324.4133 1192.5001,-334.4133 1199.5001,-334.4132"/>
</g>
<!-- 64->55 -->
<g id="edge99" class="edge">
<title>64->55</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1248.2452,-372.5411C1304.3365,-365.712 1395.8436,-351.7687 1481.2428,-323.7748"/>
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