rule_graph.svg

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<!-- Title: snakemake_dag Pages: 1 -->
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<!-- 1 -->
<g id="node2" class="node"><title>1</title>
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<!-- 1&#45;&gt;0 -->
<g id="edge2" class="edge"><title>1&#45;&gt;0</title>
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<!-- 2 -->
<g id="node3" class="node"><title>2</title>
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<text text-anchor="middle" x="207" y="-87.5" font-family="sans" font-size="10.00">fastqc</text>
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<!-- 2&#45;&gt;0 -->
<g id="edge1" class="edge"><title>2&#45;&gt;0</title>
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<!-- 3 -->
<g id="node4" class="node"><title>3</title>
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<text text-anchor="middle" x="363" y="-375.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
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<!-- 3&#45;&gt;0 -->
<g id="edge6" class="edge"><title>3&#45;&gt;0</title>
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<!-- 4 -->
<g id="node5" class="node"><title>4</title>
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<text text-anchor="middle" x="539" y="-375.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
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<!-- 4&#45;&gt;0 -->
<g id="edge8" class="edge"><title>4&#45;&gt;0</title>
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<!-- 5 -->
<g id="node6" class="node"><title>5</title>
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<text text-anchor="middle" x="467" y="-87.5" font-family="sans" font-size="10.00">plot_TIN_scores</text>
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<!-- 5&#45;&gt;0 -->
<g id="edge3" class="edge"><title>5&#45;&gt;0</title>
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<!-- 6 -->
<g id="node7" class="node"><title>6</title>
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<text text-anchor="middle" x="68" y="-303.5" font-family="sans" font-size="10.00">salmon_quantmerge_genes</text>
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<!-- 6&#45;&gt;0 -->
<g id="edge4" class="edge"><title>6&#45;&gt;0</title>
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<!-- 7 -->
<g id="node8" class="node"><title>7</title>
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<text text-anchor="middle" x="232" y="-303.5" font-family="sans" font-size="10.00">salmon_quantmerge_transcripts</text>
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<!-- 7&#45;&gt;0 -->
<g id="edge5" class="edge"><title>7&#45;&gt;0</title>
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<!-- 8 -->
<g id="node9" class="node"><title>8</title>
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<!-- 8&#45;&gt;0 -->
<g id="edge7" class="edge"><title>8&#45;&gt;0</title>
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<!-- 9 -->
<g id="node10" class="node"><title>9</title>
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<text text-anchor="middle" x="306" y="-447.5" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
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<!-- 9&#45;&gt;3 -->
<g id="edge9" class="edge"><title>9&#45;&gt;3</title>
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<!-- 13 -->
<g id="node14" class="node"><title>13</title>
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<text text-anchor="middle" x="69" y="-375.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
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<!-- 9&#45;&gt;13 -->
<g id="edge26" class="edge"><title>9&#45;&gt;13</title>
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<!-- 15 -->
<g id="node16" class="node"><title>15</title>
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<text text-anchor="middle" x="691" y="-375.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
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<!-- 9&#45;&gt;15 -->
<g id="edge30" class="edge"><title>9&#45;&gt;15</title>
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<!-- 10 -->
<g id="node11" class="node"><title>10</title>
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<text text-anchor="middle" x="446" y="-447.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
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<!-- 10&#45;&gt;3 -->
<g id="edge10" class="edge"><title>10&#45;&gt;3</title>
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<!-- 10&#45;&gt;4 -->
<g id="edge12" class="edge"><title>10&#45;&gt;4</title>
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<!-- 11 -->
<g id="node12" class="node"><title>11</title>
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<text text-anchor="middle" x="581" y="-447.5" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
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<!-- 11&#45;&gt;4 -->
<g id="edge11" class="edge"><title>11&#45;&gt;4</title>
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<!-- 14 -->
<g id="node15" class="node"><title>14</title>
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<!-- 11&#45;&gt;14 -->
<g id="edge27" class="edge"><title>11&#45;&gt;14</title>
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<!-- 17 -->
<g id="node18" class="node"><title>17</title>
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<text text-anchor="middle" x="814" y="-375.5" font-family="sans" font-size="10.00">map_genome_star</text>
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<!-- 11&#45;&gt;17 -->
<g id="edge33" class="edge"><title>11&#45;&gt;17</title>
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<!-- 12 -->
<g id="node13" class="node"><title>12</title>
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<!-- 12&#45;&gt;5 -->
<g id="edge13" class="edge"><title>12&#45;&gt;5</title>
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<!-- 13&#45;&gt;6 -->
<g id="edge15" class="edge"><title>13&#45;&gt;6</title>
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<!-- 13&#45;&gt;7 -->
<g id="edge17" class="edge"><title>13&#45;&gt;7</title>
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<!-- 14&#45;&gt;6 -->
<g id="edge14" class="edge"><title>14&#45;&gt;6</title>
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<!-- 14&#45;&gt;7 -->
<g id="edge16" class="edge"><title>14&#45;&gt;7</title>
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<!-- 15&#45;&gt;8 -->
<g id="edge20" class="edge"><title>15&#45;&gt;8</title>
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<!-- 16 -->
<g id="node17" class="node"><title>16</title>
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<!-- 15&#45;&gt;16 -->
<g id="edge32" class="edge"><title>15&#45;&gt;16</title>
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<!-- 21 -->
<g id="node22" class="node"><title>21</title>
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<!-- 15&#45;&gt;21 -->
<g id="edge38" class="edge"><title>15&#45;&gt;21</title>
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<!-- 16&#45;&gt;8 -->
<g id="edge18" class="edge"><title>16&#45;&gt;8</title>
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<!-- 16&#45;&gt;21 -->
<g id="edge35" class="edge"><title>16&#45;&gt;21</title>
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<!-- 17&#45;&gt;8 -->
<g id="edge19" class="edge"><title>17&#45;&gt;8</title>
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<!-- 18&#45;&gt;9 -->
<g id="edge21" class="edge"><title>18&#45;&gt;9</title>
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<!-- 20&#45;&gt;11 -->
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<!-- 24&#45;&gt;21 -->
<g id="edge36" class="edge"><title>24&#45;&gt;21</title>
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