Newer
Older
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<!-- Title: snakemake_dag Pages: 1 -->
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<title>1</title>
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<text text-anchor="middle" x="338.5" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">MULTIQC_report</text>
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<title>1->0</title>
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<title>2</title>
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<title>2->1</title>
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<title>3</title>
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<title>3->2</title>
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<title>4</title>
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<text text-anchor="middle" x="64.5" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">pe_fastqc</text>
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<title>5</title>
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<title>6</title>
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<text text-anchor="middle" x="93.5" y="-735.5" font-family="sans" font-size="10.00" fill="#000000">pe_genome_quantification_kallisto</text>
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<title>7</title>
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<!-- 8 -->
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<title>8</title>
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<text text-anchor="middle" x="547.5" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">plot_TIN_scores</text>
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<title>9</title>
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<text text-anchor="middle" x="338.5" y="-663.5" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_genes</text>
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<title>10</title>
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<text text-anchor="middle" x="519.5" y="-663.5" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_transcripts</text>
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<title>11</title>
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<text text-anchor="middle" x="971.5" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">star_rpm</text>
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<!-- 31 -->
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<title>31</title>
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<text text-anchor="middle" x="971.5" y="-519.5" font-family="sans" font-size="10.00" fill="#000000">rename_star_rpm_for_alfa</text>
<!-- 11->31 -->
<g id="edge48" class="edge">
<title>11->31</title>
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<title>12</title>
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<text text-anchor="middle" x="845.5" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">alfa_concat_results</text>
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<title>13</title>
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<!-- 17 -->
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<title>17</title>
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<text text-anchor="middle" x="464.5" y="-735.5" font-family="sans" font-size="10.00" fill="#000000">pe_quantification_salmon</text>
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<!-- 19 -->
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<title>19</title>
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<!-- 13->19 -->
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<title>13->19</title>
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<!-- 14 -->
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<title>14</title>
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<!-- 14->7 -->
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<title>14->7</title>
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<title>15</title>
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<title>15->7</title>
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<!-- 18 -->
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<title>18</title>
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<!-- 15->18 -->
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<title>15->18</title>
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BIOPZ-Iborra de Toledo Paula
committed
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<!-- 21 -->
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<title>21</title>
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<!-- 15->21 -->
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<title>15->21</title>
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<!-- 16 -->
<g id="node17" class="node">
<title>16</title>
<path fill="none" stroke="#56c1d8" stroke-width="2" d="M615,-540C615,-540 532,-540 532,-540 526,-540 520,-534 520,-528 520,-528 520,-516 520,-516 520,-510 526,-504 532,-504 532,-504 615,-504 615,-504 621,-504 627,-510 627,-516 627,-516 627,-528 627,-528 627,-534 621,-540 615,-540"/>
<text text-anchor="middle" x="573.5" y="-519.5" font-family="sans" font-size="10.00" fill="#000000">merge_TIN_scores</text>
</g>
<!-- 16->8 -->
<g id="edge17" class="edge">
<title>16->8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M570.2071,-503.7623C565.7529,-479.0928 557.7663,-434.8598 552.5507,-405.9731"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="555.9874,-405.3086 550.7662,-396.0896 549.0988,-406.5524 555.9874,-405.3086"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M432.7049,-719.8314C416.4395,-710.5368 396.4614,-699.1208 379.0949,-689.1971"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="380.7039,-686.0854 370.2849,-684.1628 377.2309,-692.1631 380.7039,-686.0854"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M478.3788,-719.8314C484.7136,-711.5386 492.3384,-701.557 499.2926,-692.4533"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="502.1452,-694.4847 505.4343,-684.4133 496.5825,-690.2353 502.1452,-694.4847"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M553.7647,-721.752C513.6508,-711.3628 461.2633,-697.7948 418.2129,-686.6451"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="418.8911,-683.2053 408.3329,-684.0862 417.136,-689.9817 418.8911,-683.2053"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M592.0228,-719.8314C579.9605,-710.8779 565.246,-699.9558 552.2314,-690.2955"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="554.0852,-687.3127 543.9694,-684.1628 549.913,-692.9335 554.0852,-687.3127"/>
<!-- 19->11 -->
<g id="edge22" class="edge">
<title>19->11</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M993.0894,-723.1441C1013.3376,-715.0538 1033.6146,-702.7114 1045.5,-684 1054.0788,-670.4943 1052.749,-662.2637 1045.5,-648 1037.9342,-633.1129 1024.1258,-621.3535 1010.4685,-612.6606"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1011.9689,-609.4812 1001.5827,-607.3889 1008.3972,-615.5014 1011.9689,-609.4812"/>
<!-- 20 -->
<g id="node21" class="node">
<title>20</title>
<path fill="none" stroke="#56a2d8" stroke-width="2" d="M1024.5,-684C1024.5,-684 852.5,-684 852.5,-684 846.5,-684 840.5,-678 840.5,-672 840.5,-672 840.5,-660 840.5,-660 840.5,-654 846.5,-648 852.5,-648 852.5,-648 1024.5,-648 1024.5,-648 1030.5,-648 1036.5,-654 1036.5,-660 1036.5,-660 1036.5,-672 1036.5,-672 1036.5,-678 1030.5,-684 1024.5,-684"/>
<text text-anchor="middle" x="938.5" y="-663.5" font-family="sans" font-size="10.00" fill="#000000">index_genomic_alignment_samtools</text>
<!-- 19->20 -->
<g id="edge36" class="edge">
<title>19->20</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M932.5187,-719.8314C933.3743,-712.131 934.3917,-702.9743 935.3426,-694.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="938.8283,-694.7386 936.4541,-684.4133 931.8711,-693.9656 938.8283,-694.7386"/>
<!-- 26 -->
<g id="node27" class="node">
<title>26</title>
<path fill="none" stroke="#9fd856" stroke-width="2" d="M860,-612C860,-612 765,-612 765,-612 759,-612 753,-606 753,-600 753,-600 753,-588 753,-588 753,-582 759,-576 765,-576 765,-576 860,-576 860,-576 866,-576 872,-582 872,-588 872,-588 872,-600 872,-600 872,-606 866,-612 860,-612"/>
<text text-anchor="middle" x="812.5" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">calculate_TIN_scores</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M878.2953,-719.9048C861.0278,-711.4985 843.2465,-699.7849 831.5,-684 818.2888,-666.2468 813.8129,-641.3423 812.4865,-622.2306"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="815.9733,-621.8532 812.0325,-612.0186 808.9802,-622.1642 815.9733,-621.8532"/>
BIOPZ-Iborra de Toledo Paula
committed
</g>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M946.8273,-647.8314C950.473,-639.8771 954.8309,-630.369 958.8627,-621.5723"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="962.0757,-622.9622 963.0606,-612.4133 955.7123,-620.0456 962.0757,-622.9622"/>
<!-- 20->26 -->
<g id="edge43" class="edge">
<title>20->26</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M906.7049,-647.8314C890.4395,-638.5368 870.4614,-627.1208 853.0949,-617.1971"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="854.7039,-614.0854 844.2849,-612.1628 851.2309,-620.1631 854.7039,-614.0854"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1068.7164,-719.6926C1072.1057,-700.4444 1074.4231,-669.963 1061.5,-648 1050.3537,-629.0567 1029.7305,-615.9763 1011.0356,-607.4394"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1012.3518,-604.1958 1001.7802,-603.4952 1009.6075,-610.6355 1012.3518,-604.1958"/>
</g>
<!-- 21->20 -->
<g id="edge37" class="edge">
<title>21->20</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1032.7049,-719.8314C1016.4395,-710.5368 996.4614,-699.1208 979.0949,-689.1971"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="980.7039,-686.0854 970.2849,-684.1628 977.2309,-692.1631 980.7039,-686.0854"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1065.9775,-719.8347C1066.5678,-699.5401 1064.1713,-667.0424 1045.5,-648 1033.9274,-636.1973 946.6077,-618.1855 882.2472,-606.255"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="882.5982,-602.7609 872.13,-604.3943 881.3319,-609.6454 882.5982,-602.7609"/>
<!-- 22 -->
<g id="node23" class="node">
<title>22</title>
<path fill="none" stroke="#d89556" stroke-width="2" d="M971.5,-396C971.5,-396 879.5,-396 879.5,-396 873.5,-396 867.5,-390 867.5,-384 867.5,-384 867.5,-372 867.5,-372 867.5,-366 873.5,-360 879.5,-360 879.5,-360 971.5,-360 971.5,-360 977.5,-360 983.5,-366 983.5,-372 983.5,-372 983.5,-384 983.5,-384 983.5,-390 977.5,-396 971.5,-396"/>
<text text-anchor="middle" x="925.5" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc_all_samples</text>
<!-- 22->12 -->
<g id="edge25" class="edge">
<title>22->12</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M905.3126,-359.8314C895.6486,-351.1337 883.9204,-340.5783 873.4184,-331.1265"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="875.4553,-328.251 865.6809,-324.1628 870.7725,-333.454 875.4553,-328.251"/>
<!-- 23 -->
<g id="node24" class="node">
<title>23</title>
<path fill="none" stroke="#afd856" stroke-width="2" d="M459,-900C459,-900 316,-900 316,-900 310,-900 304,-894 304,-888 304,-888 304,-876 304,-876 304,-870 310,-864 316,-864 316,-864 459,-864 459,-864 465,-864 471,-870 471,-876 471,-876 471,-888 471,-888 471,-894 465,-900 459,-900"/>
<text text-anchor="middle" x="387.5" y="-879.5" font-family="sans" font-size="10.00" fill="#000000">pe_remove_adapters_cutadapt</text>
<!-- 23->13 -->
<g id="edge26" class="edge">
<title>23->13</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M386.2383,-863.8314C385.7035,-856.131 385.0677,-846.9743 384.4734,-838.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="387.9632,-838.1467 383.7787,-828.4133 380.98,-838.6317 387.9632,-838.1467"/>
<!-- 24 -->
<g id="node25" class="node">
<title>24</title>
<path fill="none" stroke="#56d89a" stroke-width="2" d="M274,-900C274,-900 173,-900 173,-900 167,-900 161,-894 161,-888 161,-888 161,-876 161,-876 161,-870 167,-864 173,-864 173,-864 274,-864 274,-864 280,-864 286,-870 286,-876 286,-876 286,-888 286,-888 286,-894 280,-900 274,-900"/>
<text text-anchor="middle" x="223.5" y="-879.5" font-family="sans" font-size="10.00" fill="#000000">extract_transcriptome</text>
<!-- 24->14 -->
<g id="edge27" class="edge">
<title>24->14</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M223.5,-863.8314C223.5,-856.131 223.5,-846.9743 223.5,-838.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="227.0001,-838.4132 223.5,-828.4133 220.0001,-838.4133 227.0001,-838.4132"/>
<g id="node28" class="node">
<title>27</title>
<path fill="none" stroke="#56d86b" stroke-width="2" d="M586,-828C586,-828 489,-828 489,-828 483,-828 477,-822 477,-816 477,-816 477,-804 477,-804 477,-798 483,-792 489,-792 489,-792 586,-792 586,-792 592,-792 598,-798 598,-804 598,-804 598,-816 598,-816 598,-822 592,-828 586,-828"/>
<text text-anchor="middle" x="537.5" y="-807.5" font-family="sans" font-size="10.00" fill="#000000">create_index_salmon</text>
<!-- 24->27 -->
<g id="edge45" class="edge">
<title>24->27</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M286.1843,-865.9522C288.9922,-865.2826 291.774,-864.6289 294.5,-864 368.0367,-847.0355 389.357,-845.8541 467.0718,-828.0404"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="467.8812,-831.4456 476.836,-825.7833 466.3047,-824.6255 467.8812,-831.4456"/>
</g>
<!-- 25 -->
<g id="node26" class="node">
<title>25</title>
<path fill="none" stroke="#80d856" stroke-width="2" d="M746.5,-900C746.5,-900 620.5,-900 620.5,-900 614.5,-900 608.5,-894 608.5,-888 608.5,-888 608.5,-876 608.5,-876 608.5,-870 614.5,-864 620.5,-864 620.5,-864 746.5,-864 746.5,-864 752.5,-864 758.5,-870 758.5,-876 758.5,-876 758.5,-888 758.5,-888 758.5,-894 752.5,-900 746.5,-900"/>
<text text-anchor="middle" x="683.5" y="-879.5" font-family="sans" font-size="10.00" fill="#000000">remove_adapters_cutadapt</text>
</g>
<!-- 25->15 -->
<g id="edge28" class="edge">
<title>25->15</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M683.5,-863.8314C683.5,-856.131 683.5,-846.9743 683.5,-838.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="687.0001,-838.4132 683.5,-828.4133 680.0001,-838.4133 687.0001,-838.4132"/>
</g>
<!-- 26->16 -->
<g id="edge29" class="edge">
<title>26->16</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M752.8067,-576.0171C717.5467,-565.3948 672.9268,-551.9529 637.0192,-541.1355"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="637.722,-537.6919 627.1374,-538.1586 635.7028,-544.3944 637.722,-537.6919"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M519.079,-791.8314C510.3471,-783.219 499.7683,-772.7851 490.2577,-763.4048"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="492.4925,-760.6931 482.9151,-756.1628 487.577,-765.6769 492.4925,-760.6931"/>
</g>
<!-- 27->18 -->
<g id="edge32" class="edge">
<title>27->18</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M557.435,-791.8314C566.9783,-783.1337 578.5599,-772.5783 588.9306,-763.1265"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="591.538,-765.4857 596.5713,-756.1628 586.8228,-760.3121 591.538,-765.4857"/>
<!-- 28 -->
<g id="node29" class="node">
<title>28</title>
<path fill="none" stroke="#ced856" stroke-width="2" d="M1104.5,-828C1104.5,-828 1024.5,-828 1024.5,-828 1018.5,-828 1012.5,-822 1012.5,-816 1012.5,-816 1012.5,-804 1012.5,-804 1012.5,-798 1018.5,-792 1024.5,-792 1024.5,-792 1104.5,-792 1104.5,-792 1110.5,-792 1116.5,-798 1116.5,-804 1116.5,-804 1116.5,-816 1116.5,-816 1116.5,-822 1110.5,-828 1104.5,-828"/>
<text text-anchor="middle" x="1064.5" y="-807.5" font-family="sans" font-size="10.00" fill="#000000">create_index_star</text>
</g>
<!-- 28->19 -->
<g id="edge34" class="edge">
<title>28->19</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1030.6861,-791.8314C1013.2293,-782.4516 991.7513,-770.9112 973.1648,-760.9244"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="974.7686,-757.8129 964.303,-756.1628 971.4554,-763.9792 974.7686,-757.8129"/>
</g>
<!-- 28->21 -->
<g id="edge38" class="edge">
<title>28->21</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1064.5,-791.8314C1064.5,-784.131 1064.5,-774.9743 1064.5,-766.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1068.0001,-766.4132 1064.5,-756.4133 1061.0001,-766.4133 1068.0001,-766.4132"/>
</g>
<!-- 32 -->
<g id="node33" class="node">
<title>32</title>
<path fill="none" stroke="#5682d8" stroke-width="2" d="M1190.5,-612C1190.5,-612 1098.5,-612 1098.5,-612 1092.5,-612 1086.5,-606 1086.5,-600 1086.5,-600 1086.5,-588 1086.5,-588 1086.5,-582 1092.5,-576 1098.5,-576 1098.5,-576 1190.5,-576 1190.5,-576 1196.5,-576 1202.5,-582 1202.5,-588 1202.5,-588 1202.5,-600 1202.5,-600 1202.5,-606 1196.5,-612 1190.5,-612"/>
<text text-anchor="middle" x="1144.5" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">generate_alfa_index</text>
</g>
<!-- 28->32 -->
<g id="edge49" class="edge">
<title>28->32</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1094.4299,-791.7677C1106.7731,-782.6238 1119.9345,-770.4134 1127.5,-756 1149.7961,-713.5226 1150.0078,-656.2043 1147.6133,-622.3666"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1151.089,-621.9281 1146.769,-612.254 1144.1132,-622.5105 1151.089,-621.9281"/>
<!-- 29 -->
<g id="node30" class="node">
<title>29</title>
<path fill="none" stroke="#70d856" stroke-width="2" d="M986.5,-468C986.5,-468 956.5,-468 956.5,-468 950.5,-468 944.5,-462 944.5,-456 944.5,-456 944.5,-444 944.5,-444 944.5,-438 950.5,-432 956.5,-432 956.5,-432 986.5,-432 986.5,-432 992.5,-432 998.5,-438 998.5,-444 998.5,-444 998.5,-456 998.5,-456 998.5,-462 992.5,-468 986.5,-468"/>
<text text-anchor="middle" x="971.5" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc</text>
<!-- 29->22 -->
<g id="edge40" class="edge">
<title>29->22</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M959.8923,-431.8314C954.7022,-423.7079 948.4768,-413.9637 942.7575,-405.0118"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="945.5974,-402.9559 937.264,-396.4133 939.6985,-406.7246 945.5974,-402.9559"/>
<!-- 30 -->
<g id="node31" class="node">
<title>30</title>
<path fill="none" stroke="#d8c356" stroke-width="2" d="M772.5,-684C772.5,-684 636.5,-684 636.5,-684 630.5,-684 624.5,-678 624.5,-672 624.5,-672 624.5,-660 624.5,-660 624.5,-654 630.5,-648 636.5,-648 636.5,-648 772.5,-648 772.5,-648 778.5,-648 784.5,-654 784.5,-660 784.5,-660 784.5,-672 784.5,-672 784.5,-678 778.5,-684 772.5,-684"/>
<text text-anchor="middle" x="704.5" y="-663.5" font-family="sans" font-size="10.00" fill="#000000">extract_transcripts_as_bed12</text>
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</g>
<!-- 31->29 -->
<g id="edge47" class="edge">
<title>31->29</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M971.5,-503.8314C971.5,-496.131 971.5,-486.9743 971.5,-478.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="975.0001,-478.4132 971.5,-468.4133 968.0001,-478.4133 975.0001,-478.4132"/>
</g>
<!-- 32->29 -->
<g id="edge46" class="edge">
<title>32->29</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1128.0138,-575.6758C1110.4778,-556.6857 1081.4648,-526.6656 1053.5,-504 1039.1341,-492.3564 1022.2183,-480.8839 1007.4936,-471.5284"/>
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