Newer
Older
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
"http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
<!-- Generated by graphviz version 2.40.1 (20161225.0304)
-->
<!-- Title: snakemake_dag Pages: 1 -->
<svg width="1145pt" height="836pt"
viewBox="0.00 0.00 1145.00 836.00" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 832)">
<polygon fill="#ffffff" stroke="transparent" points="-4,4 -4,-832 1141,-832 1141,4 -4,4"/>
<g id="node1" class="node">
<title>0</title>
<path fill="none" stroke="#d8ac56" stroke-width="2" d="M842,-36C842,-36 812,-36 812,-36 806,-36 800,-30 800,-24 800,-24 800,-12 800,-12 800,-6 806,0 812,0 812,0 842,0 842,0 848,0 854,-6 854,-12 854,-12 854,-24 854,-24 854,-30 848,-36 842,-36"/>
<text text-anchor="middle" x="827" y="-15.5" font-family="sans" font-size="10.00" fill="#000000">finish</text>
<g id="node2" class="node">
<title>1</title>
<path fill="none" stroke="#a7d856" stroke-width="2" d="M222,-108C222,-108 158,-108 158,-108 152,-108 146,-102 146,-96 146,-96 146,-84 146,-84 146,-78 152,-72 158,-72 158,-72 222,-72 222,-72 228,-72 234,-78 234,-84 234,-84 234,-96 234,-96 234,-102 228,-108 222,-108"/>
<text text-anchor="middle" x="190" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">multiqc_report</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M234.0349,-85.0227C352.9825,-71.5781 679.2173,-34.7039 789.7865,-22.2062"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="790.2557,-25.6756 799.7993,-21.0745 789.4694,-18.7199 790.2557,-25.6756"/>
<g id="node3" class="node">
<title>2</title>
<path fill="none" stroke="#d6d856" stroke-width="2" d="M799.5,-252C799.5,-252 730.5,-252 730.5,-252 724.5,-252 718.5,-246 718.5,-240 718.5,-240 718.5,-228 718.5,-228 718.5,-222 724.5,-216 730.5,-216 730.5,-216 799.5,-216 799.5,-216 805.5,-216 811.5,-222 811.5,-228 811.5,-228 811.5,-240 811.5,-240 811.5,-246 805.5,-252 799.5,-252"/>
<text text-anchor="middle" x="765" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">prepare_bigWig</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M770.1794,-215.9555C781.0066,-178.235 806.0983,-90.8188 819.0089,-45.8399"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="822.3968,-46.7226 821.7917,-36.1451 815.6685,-44.7913 822.3968,-46.7226"/>
<g id="node4" class="node">
<title>3</title>
<path fill="none" stroke="#d8bc56" stroke-width="2" d="M933,-468C933,-468 805,-468 805,-468 799,-468 793,-462 793,-456 793,-456 793,-444 793,-444 793,-438 799,-432 805,-432 805,-432 933,-432 933,-432 939,-432 945,-438 945,-444 945,-444 945,-456 945,-456 945,-462 939,-468 933,-468"/>
<text text-anchor="middle" x="869" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_genes</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M865.892,-431.8777C861.4984,-404.6417 854,-351.4948 854,-306 854,-306 854,-306 854,-162 854,-121.2235 843.4119,-75.0472 835.4967,-46.2247"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="838.8166,-45.1024 832.726,-36.4332 832.081,-47.0083 838.8166,-45.1024"/>
<g id="node5" class="node">
<title>4</title>
<path fill="none" stroke="#d86656" stroke-width="2" d="M1125,-468C1125,-468 975,-468 975,-468 969,-468 963,-462 963,-456 963,-456 963,-444 963,-444 963,-438 969,-432 975,-432 975,-432 1125,-432 1125,-432 1131,-432 1137,-438 1137,-444 1137,-444 1137,-456 1137,-456 1137,-462 1131,-468 1125,-468"/>
<text text-anchor="middle" x="1050" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_transcripts</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1032.0737,-431.7434C1008.7654,-405.9886 971,-356.4717 971,-306 971,-306 971,-306 971,-162 971,-101.0638 905.7286,-56.9075 863.0745,-34.5576"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="864.5862,-31.3998 854.0853,-29.992 861.4163,-37.641 864.5862,-31.3998"/>
<g id="node6" class="node">
<title>5</title>
<path fill="none" stroke="#b6d856" stroke-width="2" d="M42,-396C42,-396 12,-396 12,-396 6,-396 0,-390 0,-384 0,-384 0,-372 0,-372 0,-366 6,-360 12,-360 12,-360 42,-360 42,-360 48,-360 54,-366 54,-372 54,-372 54,-384 54,-384 54,-390 48,-396 42,-396"/>
<text text-anchor="middle" x="27" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">fastqc</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M27.5291,-359.7719C29.6541,-317.3835 40.2588,-210.7263 93,-144 104.2897,-129.7166 120.4546,-118.6219 136.3599,-110.3072"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="138.2306,-113.2875 145.6558,-105.7299 135.1383,-107.0075 138.2306,-113.2875"/>
<g id="node7" class="node">
<title>6</title>
<path fill="none" stroke="#56d87b" stroke-width="2" d="M217.5,-612C217.5,-612 54.5,-612 54.5,-612 48.5,-612 42.5,-606 42.5,-600 42.5,-600 42.5,-588 42.5,-588 42.5,-582 48.5,-576 54.5,-576 54.5,-576 217.5,-576 217.5,-576 223.5,-576 229.5,-582 229.5,-588 229.5,-588 229.5,-600 229.5,-600 229.5,-606 223.5,-612 217.5,-612"/>
<text text-anchor="middle" x="136" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">pe_genome_quantification_kallisto</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M129.8498,-575.5984C121.3372,-548.4466 107,-495.9035 107,-450 107,-450 107,-450 107,-234 107,-192.6022 109.5347,-179.398 131,-144 137.5811,-133.1472 146.9844,-123.1601 156.3555,-114.8041"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="158.7958,-117.3238 164.1571,-108.1855 154.2673,-111.9859 158.7958,-117.3238"/>
<g id="node8" class="node">
<title>7</title>
<path fill="none" stroke="#5673d8" stroke-width="2" d="M406,-612C406,-612 260,-612 260,-612 254,-612 248,-606 248,-600 248,-600 248,-588 248,-588 248,-582 254,-576 260,-576 260,-576 406,-576 406,-576 412,-576 418,-582 418,-588 418,-588 418,-600 418,-600 418,-606 412,-612 406,-612"/>
<text text-anchor="middle" x="333" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">genome_quantification_kallisto</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M256.4453,-575.9218C233.7902,-567.7741 210.2043,-556.214 192,-540 158.3024,-509.9864 145,-495.1259 145,-450 145,-450 145,-450 145,-234 145,-191.8263 162.802,-145.738 176.0122,-117.3433"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="179.2895,-118.6034 180.4567,-108.0731 172.9774,-115.5772 179.2895,-118.6034"/>
</g>
<!-- 8 -->
<g id="node9" class="node">
<title>8</title>
<path fill="none" stroke="#56d8d8" stroke-width="2" d="M279,-252C279,-252 209,-252 209,-252 203,-252 197,-246 197,-240 197,-240 197,-228 197,-228 197,-222 203,-216 209,-216 209,-216 279,-216 279,-216 285,-216 291,-222 291,-228 291,-228 291,-240 291,-240 291,-246 285,-252 279,-252"/>
<text text-anchor="middle" x="244" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">plot_TIN_scores</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M229.8968,-215.9479C222.6638,-205.8743 214.2869,-192.8047 209,-180 200.7977,-160.1341 195.9684,-136.2814 193.2325,-118.1244"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="196.6921,-117.5908 191.8539,-108.1652 189.7582,-118.5507 196.6921,-117.5908"/>
<g id="node10" class="node">
<title>9</title>
<path fill="none" stroke="#56a2d8" stroke-width="2" d="M317.5,-180C317.5,-180 230.5,-180 230.5,-180 224.5,-180 218.5,-174 218.5,-168 218.5,-168 218.5,-156 218.5,-156 218.5,-150 224.5,-144 230.5,-144 230.5,-144 317.5,-144 317.5,-144 323.5,-144 329.5,-150 329.5,-156 329.5,-156 329.5,-168 329.5,-168 329.5,-174 323.5,-180 317.5,-180"/>
<text text-anchor="middle" x="274" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">alfa_concat_results</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M252.8033,-143.8314C242.5566,-135.0485 230.0997,-124.3712 218.9903,-114.8489"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="221.0603,-112.0134 211.19,-108.1628 216.5048,-117.3282 221.0603,-112.0134"/>
<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
<path fill="none" stroke="#5682d8" stroke-width="2" d="M466.5,-180C466.5,-180 359.5,-180 359.5,-180 353.5,-180 347.5,-174 347.5,-168 347.5,-168 347.5,-156 347.5,-156 347.5,-150 353.5,-144 359.5,-144 359.5,-144 466.5,-144 466.5,-144 472.5,-144 478.5,-150 478.5,-156 478.5,-156 478.5,-168 478.5,-168 478.5,-174 472.5,-180 466.5,-180"/>
<text text-anchor="middle" x="413" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">prepare_multiqc_config</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M357.0155,-143.9243C322.3749,-132.7399 278.1361,-118.4565 243.8922,-107.4002"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="244.654,-103.9683 234.0623,-104.2264 242.5032,-110.6297 244.654,-103.9683"/>
<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
<path fill="none" stroke="#d88556" stroke-width="2" d="M689,-324C689,-324 623,-324 623,-324 617,-324 611,-318 611,-312 611,-312 611,-300 611,-300 611,-294 617,-288 623,-288 623,-288 689,-288 689,-288 695,-288 701,-294 701,-300 701,-300 701,-312 701,-312 701,-318 695,-324 689,-324"/>
<text text-anchor="middle" x="656" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">sort_bed_4_big</text>
<!-- 11->2 -->
<g id="edge12" class="edge">
<title>11->2</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M683.5053,-287.8314C697.318,-278.7074 714.2256,-267.539 729.0529,-257.7449"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="731.0886,-260.5949 737.5035,-252.1628 727.2304,-254.7541 731.0886,-260.5949"/>
<g id="node13" class="node">
<title>12</title>
<path fill="none" stroke="#56d8c9" stroke-width="2" d="M791,-684C791,-684 711,-684 711,-684 705,-684 699,-678 699,-672 699,-672 699,-660 699,-660 699,-654 705,-648 711,-648 711,-648 791,-648 791,-648 797,-648 803,-654 803,-660 803,-660 803,-672 803,-672 803,-678 797,-684 791,-684"/>
<text text-anchor="middle" x="751" y="-663.5" font-family="sans" font-size="10.00" fill="#000000">create_index_star</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M753.9008,-647.8696C758.0015,-620.6233 765,-567.4634 765,-522 765,-522 765,-522 765,-378 765,-337.876 765,-291.4631 765,-262.4177"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="768.5001,-262.1853 765,-252.1854 761.5001,-262.1854 768.5001,-262.1853"/>
<!-- 22 -->
<g id="node23" class="node">
<title>22</title>
<path fill="none" stroke="#56d85b" stroke-width="2" d="M978.5,-612C978.5,-612 881.5,-612 881.5,-612 875.5,-612 869.5,-606 869.5,-600 869.5,-600 869.5,-588 869.5,-588 869.5,-582 875.5,-576 881.5,-576 881.5,-576 978.5,-576 978.5,-576 984.5,-576 990.5,-582 990.5,-588 990.5,-588 990.5,-600 990.5,-600 990.5,-606 984.5,-612 978.5,-612"/>
<text text-anchor="middle" x="930" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">create_index_salmon</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M796.1693,-647.8314C820.3223,-638.1162 850.2378,-626.0831 875.6556,-615.8592"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="877.1841,-619.017 885.1556,-612.038 874.5718,-612.5227 877.1841,-619.017"/>
<!-- 30 -->
<g id="node31" class="node">
<title>30</title>
<path fill="none" stroke="#88d856" stroke-width="2" d="M549.5,-612C549.5,-612 448.5,-612 448.5,-612 442.5,-612 436.5,-606 436.5,-600 436.5,-600 436.5,-588 436.5,-588 436.5,-582 442.5,-576 448.5,-576 448.5,-576 549.5,-576 549.5,-576 555.5,-576 561.5,-582 561.5,-588 561.5,-588 561.5,-600 561.5,-600 561.5,-606 555.5,-612 549.5,-612"/>
<text text-anchor="middle" x="499" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">pe_map_genome_star</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M698.768,-650.5447C695.8027,-649.6805 692.8641,-648.8274 690,-648 650.9637,-636.7227 607.3664,-624.3778 571.6913,-614.3413"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="572.4237,-610.9115 561.8496,-611.5745 570.5292,-617.6503 572.4237,-610.9115"/>
<!-- 33 -->
<g id="node34" class="node">
<title>33</title>
<path fill="none" stroke="#56c1d8" stroke-width="2" d="M674.5,-612C674.5,-612 591.5,-612 591.5,-612 585.5,-612 579.5,-606 579.5,-600 579.5,-600 579.5,-588 579.5,-588 579.5,-582 585.5,-576 591.5,-576 591.5,-576 674.5,-576 674.5,-576 680.5,-576 686.5,-582 686.5,-588 686.5,-588 686.5,-600 686.5,-600 686.5,-606 680.5,-612 674.5,-612"/>
<text text-anchor="middle" x="633" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">map_genome_star</text>
<!-- 12->33 -->
<g id="edge53" class="edge">
<title>12->33</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M721.2236,-647.8314C706.1307,-638.6221 687.6243,-627.3301 671.4657,-617.4706"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="673.1263,-614.3838 662.7669,-612.1628 669.4802,-620.3593 673.1263,-614.3838"/>
</g>
<!-- 34 -->
<g id="node35" class="node">
<title>34</title>
<path fill="none" stroke="#d89556" stroke-width="2" d="M725,-396C725,-396 633,-396 633,-396 627,-396 621,-390 621,-384 621,-384 621,-372 621,-372 621,-366 627,-360 633,-360 633,-360 725,-360 725,-360 731,-360 737,-366 737,-372 737,-372 737,-384 737,-384 737,-390 731,-396 725,-396"/>
<text text-anchor="middle" x="679" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">generate_alfa_index</text>
</g>
<!-- 12->34 -->
<g id="edge55" class="edge">
<title>12->34</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M746.4961,-647.9843C734.3235,-599.2939 700.699,-464.7961 686.0143,-406.0573"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="689.3231,-404.8614 683.5022,-396.0089 682.5321,-406.5592 689.3231,-404.8614"/>
</g>
<!-- 13 -->
<g id="node14" class="node">
<title>13</title>
<path fill="none" stroke="#56d0d8" stroke-width="2" d="M926,-540C926,-540 808,-540 808,-540 802,-540 796,-534 796,-528 796,-528 796,-516 796,-516 796,-510 802,-504 808,-504 808,-504 926,-504 926,-504 932,-504 938,-510 938,-516 938,-516 938,-528 938,-528 938,-534 932,-540 926,-540"/>
<text text-anchor="middle" x="867" y="-519.5" font-family="sans" font-size="10.00" fill="#000000">pe_quantification_salmon</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M867.5047,-503.8314C867.7186,-496.131 867.9729,-486.9743 868.2106,-478.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="871.7094,-478.5066 868.4885,-468.4133 864.7121,-478.3122 871.7094,-478.5066"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M913.1786,-503.8314C937.9801,-494.0734 968.725,-481.977 994.7843,-471.7242"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="996.1292,-474.9563 1004.1534,-468.038 993.5663,-468.4423 996.1292,-474.9563"/>
<g id="node15" class="node">
<title>14</title>
<path fill="none" stroke="#c6d856" stroke-width="2" d="M1069.5,-540C1069.5,-540 968.5,-540 968.5,-540 962.5,-540 956.5,-534 956.5,-528 956.5,-528 956.5,-516 956.5,-516 956.5,-510 962.5,-504 968.5,-504 968.5,-504 1069.5,-504 1069.5,-504 1075.5,-504 1081.5,-510 1081.5,-516 1081.5,-516 1081.5,-528 1081.5,-528 1081.5,-534 1075.5,-540 1069.5,-540"/>
<text text-anchor="middle" x="1019" y="-519.5" font-family="sans" font-size="10.00" fill="#000000">quantification_salmon</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M981.1487,-503.8314C961.2654,-494.2874 936.7218,-482.5065 915.6695,-472.4013"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="917.109,-469.21 906.5791,-468.038 914.0798,-475.5207 917.109,-469.21"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1026.8226,-503.8314C1030.2109,-495.9617 1034.2541,-486.5712 1038.0076,-477.8533"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1041.3321,-478.9822 1042.0721,-468.4133 1034.9027,-476.214 1041.3321,-478.9822"/>
<!-- 15 -->
<g id="node16" class="node">
<title>15</title>
<path fill="none" stroke="#56b1d8" stroke-width="2" d="M309,-828C309,-828 279,-828 279,-828 273,-828 267,-822 267,-816 267,-816 267,-804 267,-804 267,-798 273,-792 279,-792 279,-792 309,-792 309,-792 315,-792 321,-798 321,-804 321,-804 321,-816 321,-816 321,-822 315,-828 309,-828"/>
<text text-anchor="middle" x="294" y="-807.5" font-family="sans" font-size="10.00" fill="#000000">start</text>
BIOPZ-Iborra de Toledo Paula
committed
</g>
<!-- 15->5 -->
<g id="edge17" class="edge">
<title>15->5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M266.9948,-808.5749C196.9765,-803.2851 15,-778.6966 15,-666 15,-666 15,-666 15,-522 15,-481.7369 19.7166,-435.3594 23.2358,-406.3596"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="26.7452,-406.5021 24.5136,-396.145 19.7993,-405.6332 26.7452,-406.5021"/>
<!-- 23 -->
<g id="node24" class="node">
<title>23</title>
<path fill="none" stroke="#56d86b" stroke-width="2" d="M365.5,-756C365.5,-756 222.5,-756 222.5,-756 216.5,-756 210.5,-750 210.5,-744 210.5,-744 210.5,-732 210.5,-732 210.5,-726 216.5,-720 222.5,-720 222.5,-720 365.5,-720 365.5,-720 371.5,-720 377.5,-726 377.5,-732 377.5,-732 377.5,-744 377.5,-744 377.5,-750 371.5,-756 365.5,-756"/>
<text text-anchor="middle" x="294" y="-735.5" font-family="sans" font-size="10.00" fill="#000000">pe_remove_adapters_cutadapt</text>
<!-- 15->23 -->
<g id="edge37" class="edge">
<title>15->23</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M294,-791.8314C294,-784.131 294,-774.9743 294,-766.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="297.5001,-766.4132 294,-756.4133 290.5001,-766.4133 297.5001,-766.4132"/>
<!-- 25 -->
<g id="node26" class="node">
<title>25</title>
<path fill="none" stroke="#d8cb56" stroke-width="2" d="M677,-756C677,-756 551,-756 551,-756 545,-756 539,-750 539,-744 539,-744 539,-732 539,-732 539,-726 545,-720 551,-720 551,-720 677,-720 677,-720 683,-720 689,-726 689,-732 689,-732 689,-744 689,-744 689,-750 683,-756 677,-756"/>
<text text-anchor="middle" x="614" y="-735.5" font-family="sans" font-size="10.00" fill="#000000">remove_adapters_cutadapt</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M321.0072,-803.9234C366.3899,-793.7123 459.7683,-772.7021 528.9702,-757.1317"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="530.0085,-760.4857 538.9963,-754.8758 528.4719,-753.6564 530.0085,-760.4857"/>
<g id="node17" class="node">
<title>16</title>
<path fill="none" stroke="#78d856" stroke-width="2" d="M517,-684C517,-684 389,-684 389,-684 383,-684 377,-678 377,-672 377,-672 377,-660 377,-660 377,-654 383,-648 389,-648 389,-648 517,-648 517,-648 523,-648 529,-654 529,-660 529,-660 529,-672 529,-672 529,-678 523,-684 517,-684"/>
<text text-anchor="middle" x="453" y="-663.5" font-family="sans" font-size="10.00" fill="#000000">pe_remove_polya_cutadapt</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M376.6672,-648.6626C331.0858,-638.3097 272.973,-625.1106 225.2716,-614.2762"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="225.7858,-610.8039 215.2589,-612.002 224.2353,-617.63 225.7858,-610.8039"/>
</g>
<!-- 16->13 -->
<g id="edge25" class="edge">
<title>16->13</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M529.0444,-649.6106C597.3012,-634.8201 687.9868,-614.9393 696,-612 744.2839,-594.2888 796.0604,-565.5158 829.832,-545.2804"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="831.694,-548.2447 838.439,-540.0742 828.071,-542.2552 831.694,-548.2447"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M464.6077,-647.8314C469.7978,-639.7079 476.0232,-629.9637 481.7425,-621.0118"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="484.8015,-622.7246 487.236,-612.4133 478.9026,-618.9559 484.8015,-622.7246"/>
<!-- 17 -->
<g id="node18" class="node">
<title>17</title>
<path fill="none" stroke="#5663d8" stroke-width="2" d="M346.5,-684C346.5,-684 249.5,-684 249.5,-684 243.5,-684 237.5,-678 237.5,-672 237.5,-672 237.5,-660 237.5,-660 237.5,-654 243.5,-648 249.5,-648 249.5,-648 346.5,-648 346.5,-648 352.5,-648 358.5,-654 358.5,-660 358.5,-660 358.5,-672 358.5,-672 358.5,-678 352.5,-684 346.5,-684"/>
<text text-anchor="middle" x="298" y="-663.5" font-family="sans" font-size="10.00" fill="#000000">create_index_kallisto</text>
<!-- 17->6 -->
<g id="edge19" class="edge">
<title>17->6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M257.1206,-647.8314C235.454,-638.2018 208.6637,-626.295 185.7922,-616.1299"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="187.1451,-612.9011 176.5855,-612.038 184.3021,-619.2978 187.1451,-612.9011"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M306.832,-647.8314C310.6986,-639.8771 315.3206,-630.369 319.5968,-621.5723"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="322.8249,-622.9371 324.0491,-612.4133 316.5293,-619.8768 322.8249,-622.9371"/>
</g>
<!-- 18 -->
<g id="node19" class="node">
<title>18</title>
<path fill="none" stroke="#56d8b9" stroke-width="2" d="M669,-684C669,-684 559,-684 559,-684 553,-684 547,-678 547,-672 547,-672 547,-660 547,-660 547,-654 553,-648 559,-648 559,-648 669,-648 669,-648 675,-648 681,-654 681,-660 681,-660 681,-672 681,-672 681,-678 675,-684 669,-684"/>
<text text-anchor="middle" x="614" y="-663.5" font-family="sans" font-size="10.00" fill="#000000">remove_polya_cutadapt</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M546.6935,-648.7542C506.7096,-638.5092 455.7534,-625.4528 413.6292,-614.6594"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="414.2344,-611.2015 403.6786,-612.1098 412.4969,-617.9825 414.2344,-611.2015"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M681.1792,-649.6297C735.4104,-636.1652 804.6626,-618.3114 817,-612 839.4944,-600.4926 838.918,-588.2802 861,-576 887.6283,-561.1915 919.0252,-549.4402 946.7861,-540.7318"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="947.9014,-544.0508 956.4401,-537.7785 945.8536,-537.357 947.9014,-544.0508"/>
</g>
<!-- 18->33 -->
<g id="edge54" class="edge">
<title>18->33</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M618.7945,-647.8314C620.8489,-640.0463 623.296,-630.7729 625.5756,-622.1347"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="628.9735,-622.9753 628.1409,-612.4133 622.2052,-621.1892 628.9735,-622.9753"/>
</g>
<!-- 19 -->
<g id="node20" class="node">
<title>19</title>
<path fill="none" stroke="#56d88a" stroke-width="2" d="M319.5,-396C319.5,-396 236.5,-396 236.5,-396 230.5,-396 224.5,-390 224.5,-384 224.5,-384 224.5,-372 224.5,-372 224.5,-366 230.5,-360 236.5,-360 236.5,-360 319.5,-360 319.5,-360 325.5,-360 331.5,-366 331.5,-372 331.5,-372 331.5,-384 331.5,-384 331.5,-390 325.5,-396 319.5,-396"/>
<text text-anchor="middle" x="278" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">merge_TIN_scores</text>
</g>
<!-- 19->8 -->
<g id="edge22" class="edge">
<title>19->8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M273.6939,-359.7623C267.8691,-335.0928 257.4252,-290.8598 250.6048,-261.9731"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="253.9755,-261.0177 248.2712,-252.0896 247.1628,-262.6263 253.9755,-261.0177"/>
<!-- 20 -->
<g id="node21" class="node">
<title>20</title>
<path fill="none" stroke="#d87556" stroke-width="2" d="M518,-252C518,-252 426,-252 426,-252 420,-252 414,-246 414,-240 414,-240 414,-228 414,-228 414,-222 420,-216 426,-216 426,-216 518,-216 518,-216 524,-216 530,-222 530,-228 530,-228 530,-240 530,-240 530,-246 524,-252 518,-252"/>
<text text-anchor="middle" x="472" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc_all_samples</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M422.2918,-215.9243C395.2241,-206.0815 361.5561,-193.8386 333.1451,-183.5073"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="334.3227,-180.2114 323.7286,-180.0831 331.9305,-186.7899 334.3227,-180.2114"/>
<!-- 21 -->
<g id="node22" class="node">
<title>21</title>
<path fill="none" stroke="#d85656" stroke-width="2" d="M591,-396C591,-396 469,-396 469,-396 463,-396 457,-390 457,-384 457,-384 457,-372 457,-372 457,-366 463,-360 469,-360 469,-360 591,-360 591,-360 597,-360 603,-366 603,-372 603,-372 603,-384 603,-384 603,-390 597,-396 591,-396"/>
<text text-anchor="middle" x="530" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">rename_star_rpm_for_alfa</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M561.7951,-359.8314C578.0605,-350.5368 598.0386,-339.1208 615.4051,-329.1971"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="617.2691,-332.1631 624.2151,-324.1628 613.7961,-326.0854 617.2691,-332.1631"/>
<!-- 27 -->
<g id="node28" class="node">
<title>27</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" d="M545,-324C545,-324 515,-324 515,-324 509,-324 503,-318 503,-312 503,-312 503,-300 503,-300 503,-294 509,-288 515,-288 515,-288 545,-288 545,-288 551,-288 557,-294 557,-300 557,-300 557,-312 557,-312 557,-318 551,-324 545,-324"/>
<text text-anchor="middle" x="530" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M530,-359.8314C530,-352.131 530,-342.9743 530,-334.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="533.5001,-334.4132 530,-324.4133 526.5001,-334.4133 533.5001,-334.4132"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M914.1024,-575.8314C906.7722,-567.454 897.934,-557.3531 889.9031,-548.1749"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="892.3307,-545.6343 883.1116,-540.4133 887.0627,-550.2438 892.3307,-545.6343"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M952.4585,-575.8314C963.4205,-566.9632 976.7699,-556.1637 988.6265,-546.5718"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="990.9755,-549.1734 996.5487,-540.1628 986.5729,-543.7313 990.9755,-549.1734"/>
<!-- 23->16 -->
<g id="edge29" class="edge">
<title>23->16</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M334.1224,-719.8314C355.2932,-710.2446 381.4483,-698.4008 403.8303,-688.2655"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="405.5003,-691.3515 413.1661,-684.038 402.6128,-684.9748 405.5003,-691.3515"/>
<g id="node25" class="node">
<title>24</title>
<path fill="none" stroke="#5692d8" stroke-width="2" d="M508.5,-756C508.5,-756 407.5,-756 407.5,-756 401.5,-756 395.5,-750 395.5,-744 395.5,-744 395.5,-732 395.5,-732 395.5,-726 401.5,-720 407.5,-720 407.5,-720 508.5,-720 508.5,-720 514.5,-720 520.5,-726 520.5,-732 520.5,-732 520.5,-744 520.5,-744 520.5,-750 514.5,-756 508.5,-756"/>
<text text-anchor="middle" x="458" y="-735.5" font-family="sans" font-size="10.00" fill="#000000">extract_transcriptome</text>
<!-- 24->17 -->
<g id="edge30" class="edge">
<title>24->17</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M417.6252,-719.8314C396.3213,-710.2446 370.0017,-698.4008 347.4789,-688.2655"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="348.6399,-684.95 338.0844,-684.038 345.7674,-691.3334 348.6399,-684.95"/>
<!-- 29 -->
<g id="node30" class="node">
<title>29</title>
<path fill="none" stroke="#70d856" stroke-width="2" d="M1027,-684C1027,-684 833,-684 833,-684 827,-684 821,-678 821,-672 821,-672 821,-660 821,-660 821,-654 827,-648 833,-648 833,-648 1027,-648 1027,-648 1033,-648 1039,-654 1039,-660 1039,-660 1039,-672 1039,-672 1039,-678 1033,-684 1027,-684"/>
<text text-anchor="middle" x="930" y="-663.5" font-family="sans" font-size="10.00" fill="#000000">concatenate_transcriptome_and_genome</text>
<!-- 24->29 -->
<g id="edge48" class="edge">
<title>24->29</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M520.7325,-721.8538C523.859,-721.1946 526.961,-720.5718 530,-720 651.0189,-697.2303 685.1517,-701.2979 810.7194,-684.1497"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="811.2969,-687.6032 820.7227,-682.7654 810.3373,-680.6693 811.2969,-687.6032"/>
<!-- 25->18 -->
<g id="edge31" class="edge">
<title>25->18</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M614,-719.8314C614,-712.131 614,-702.9743 614,-694.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="617.5001,-694.4132 614,-684.4133 610.5001,-694.4133 617.5001,-694.4132"/>
<!-- 26 -->
<g id="node27" class="node">
<title>26</title>
<path fill="none" stroke="#97d856" stroke-width="2" d="M338.5,-468C338.5,-468 243.5,-468 243.5,-468 237.5,-468 231.5,-462 231.5,-456 231.5,-456 231.5,-444 231.5,-444 231.5,-438 237.5,-432 243.5,-432 243.5,-432 338.5,-432 338.5,-432 344.5,-432 350.5,-438 350.5,-444 350.5,-444 350.5,-456 350.5,-456 350.5,-462 344.5,-468 338.5,-468"/>
<text text-anchor="middle" x="291" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">calculate_TIN_scores</text>
<!-- 26->19 -->
<g id="edge32" class="edge">
<title>26->19</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M287.7196,-431.8314C286.3292,-424.131 284.6759,-414.9743 283.1308,-406.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="286.5458,-405.6322 281.3246,-396.4133 279.6572,-406.8761 286.5458,-405.6322"/>
<!-- 27->20 -->
<g id="edge33" class="edge">
<title>27->20</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M515.3642,-287.8314C508.6839,-279.5386 500.6432,-269.557 493.3096,-260.4533"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="495.8319,-258.0052 486.8329,-252.4133 490.3806,-262.3965 495.8319,-258.0052"/>
<!-- 28 -->
<g id="node29" class="node">
<title>28</title>
<path fill="none" stroke="#d8a456" stroke-width="2" d="M609,-468C609,-468 573,-468 573,-468 567,-468 561,-462 561,-456 561,-456 561,-444 561,-444 561,-438 567,-432 573,-432 573,-432 609,-432 609,-432 615,-432 621,-438 621,-444 621,-444 621,-456 621,-456 621,-462 615,-468 609,-468"/>
<text text-anchor="middle" x="591" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">star_rpm</text>
<!-- 28->21 -->
<g id="edge34" class="edge">
<title>28->21</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M575.6071,-431.8314C568.5096,-423.454 559.952,-413.3531 552.176,-404.1749"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="554.7348,-401.7807 545.6001,-396.4133 549.3939,-406.3056 554.7348,-401.7807"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M930,-647.8314C930,-640.131 930,-630.9743 930,-622.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="933.5001,-622.4132 930,-612.4133 926.5001,-622.4133 933.5001,-622.4132"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M436.2442,-577.9722C433.1239,-577.2817 430.0296,-576.6199 427,-576 377.3918,-565.85 234.8551,-578.5298 202,-540 191.6184,-527.8253 194.1512,-517.9426 202,-504 209.2034,-491.2038 220.7994,-481.0907 233.2742,-473.2465"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="235.1189,-476.2227 242.0078,-468.1733 231.6028,-470.1698 235.1189,-476.2227"/>
<!-- 30->28 -->
<g id="edge46" class="edge">
<title>30->28</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M552.7084,-575.7905C568.8649,-567.5107 584.7454,-555.9057 594,-540 604.8131,-521.4157 603.1421,-496.8239 599.2798,-478.0433"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="602.6794,-477.2099 596.974,-468.2825 595.8669,-478.8193 602.6794,-477.2099"/>
<!-- 31 -->
<g id="node32" class="node">
<title>31</title>
<path fill="none" stroke="#56d89a" stroke-width="2" d="M573,-540C573,-540 401,-540 401,-540 395,-540 389,-534 389,-528 389,-528 389,-516 389,-516 389,-510 395,-504 401,-504 401,-504 573,-504 573,-504 579,-504 585,-510 585,-516 585,-516 585,-528 585,-528 585,-534 579,-540 573,-540"/>
<text text-anchor="middle" x="487" y="-519.5" font-family="sans" font-size="10.00" fill="#000000">index_genomic_alignment_samtools</text>
<!-- 30->31 -->
<g id="edge52" class="edge">
<title>30->31</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M495.9719,-575.8314C494.6885,-568.131 493.1624,-558.9743 491.7361,-550.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="495.1653,-549.7018 490.0689,-540.4133 488.2606,-550.8526 495.1653,-549.7018"/>
</g>
<!-- 31->26 -->
<g id="edge42" class="edge">
<title>31->26</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M437.7939,-503.9243C411.1161,-494.1243 377.9614,-481.945 349.9148,-471.6422"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="350.8199,-468.246 340.2263,-468.0831 348.4062,-474.8167 350.8199,-468.246"/>
</g>
<!-- 31->28 -->
<g id="edge47" class="edge">
<title>31->28</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M513.2436,-503.8314C526.2995,-494.7927 542.2535,-483.7476 556.3047,-474.0198"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="558.5351,-476.7326 564.7648,-468.1628 554.5506,-470.9773 558.5351,-476.7326"/>
<g id="node33" class="node">
<title>32</title>
<path fill="none" stroke="#61d856" stroke-width="2" d="M359,-540C359,-540 223,-540 223,-540 217,-540 211,-534 211,-528 211,-528 211,-516 211,-516 211,-510 217,-504 223,-504 223,-504 359,-504 359,-504 365,-504 371,-510 371,-516 371,-516 371,-528 371,-528 371,-534 365,-540 359,-540"/>
<text text-anchor="middle" x="291" y="-519.5" font-family="sans" font-size="10.00" fill="#000000">extract_transcripts_as_bed12</text>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M291,-503.8314C291,-496.131 291,-486.9743 291,-478.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="294.5001,-478.4132 291,-468.4133 287.5001,-478.4133 294.5001,-478.4132"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M630.2977,-575.6979C626.2231,-554.9601 616.4396,-521.746 594,-504 558.7533,-476.1257 439.0231,-461.5688 361.0402,-454.8624"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="361.0572,-451.3517 350.8003,-454.0061 360.4738,-458.3274 361.0572,-451.3517"/>
</g>
<!-- 33->28 -->
<g id="edge45" class="edge">
<title>33->28</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M647.947,-575.85C661.321,-557.2624 677.0963,-527.8017 665,-504 657.4342,-489.1129 643.6258,-477.3535 629.9685,-468.6606"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="631.4689,-465.4812 621.0827,-463.3889 627.8972,-471.5014 631.4689,-465.4812"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M596.158,-575.8314C576.8918,-566.3302 553.1301,-554.6121 532.7008,-544.5374"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="534.0938,-541.3219 523.577,-540.038 530.9977,-547.6 534.0938,-541.3219"/>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M641.401,-359.8314C618.3665,-348.7006 589.0355,-334.5272 566.2526,-323.5181"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="567.7689,-320.3636 557.2422,-319.164 564.7233,-326.6663 567.7689,-320.3636"/>