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<!-- 1 -->
<g id="node2" class="node">
<title>1</title>
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<!-- 1&#45;&gt;0 -->
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<title>1&#45;&gt;0</title>
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<!-- 2 -->
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<title>2</title>
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<text text-anchor="middle" x="707" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">prepare_bigWig</text>
<!-- 2&#45;&gt;0 -->
<g id="edge3" class="edge">
<title>2&#45;&gt;0</title>
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<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
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<text text-anchor="middle" x="803" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_genes</text>
<!-- 3&#45;&gt;0 -->
<g id="edge2" class="edge">
<title>3&#45;&gt;0</title>
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<!-- 4 -->
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<title>4</title>
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<text text-anchor="middle" x="967" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_transcripts</text>
<!-- 4&#45;&gt;0 -->
<g id="edge1" class="edge">
<title>4&#45;&gt;0</title>
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<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
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<text text-anchor="middle" x="27" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">fastqc</text>
<!-- 5&#45;&gt;1 -->
<g id="edge5" class="edge">
<title>5&#45;&gt;1</title>
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<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
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<text text-anchor="middle" x="132" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">pe_genome_quantification_kallisto</text>
<!-- 6&#45;&gt;1 -->
<g id="edge7" class="edge">
<title>6&#45;&gt;1</title>
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<!-- 7 -->
<g id="node8" class="node">
<title>7</title>
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<text text-anchor="middle" x="308" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">genome_quantification_kallisto</text>
<!-- 7&#45;&gt;1 -->
<g id="edge6" class="edge">
<title>7&#45;&gt;1</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M233.7796,-575.8971C211.3882,-567.7205 188.0007,-556.15 170,-540 136.4112,-509.8646 123,-495.1259 123,-450 123,-450 123,-450 123,-234 123,-191.8263 140.802,-145.738 154.0122,-117.3433"/>
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<g id="node9" class="node">
<title>8</title>
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<text text-anchor="middle" x="218" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">plot_TIN_scores</text>
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Alex Kanitz committed
</g>
<!-- 8&#45;&gt;1 -->
<g id="edge8" class="edge">
<title>8&#45;&gt;1</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M205.586,-215.7235C199.2022,-205.5841 191.7796,-192.5233 187,-180 179.3363,-159.9202 174.4793,-136.0784 171.596,-117.98"/>
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Dominik Burri's avatar
Dominik Burri committed
<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
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<text text-anchor="middle" x="247" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">alfa_concat_results</text>
<!-- 9&#45;&gt;1 -->
<g id="edge9" class="edge">
<title>9&#45;&gt;1</title>
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<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
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<text text-anchor="middle" x="374" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">prepare_multiqc_config</text>
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</g>
<!-- 10&#45;&gt;1 -->
<g id="edge10" class="edge">
<title>10&#45;&gt;1</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M322.2834,-143.9243C289.8808,-132.5991 248.3873,-118.0965 216.594,-106.9843"/>
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<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
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<text text-anchor="middle" x="608" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">sort_bed_4_big</text>
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</g>
<!-- 11&#45;&gt;2 -->
<g id="edge12" class="edge">
<title>11&#45;&gt;2</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M632.9819,-287.8314C645.2928,-278.8779 660.3107,-267.9558 673.5937,-258.2955"/>
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<g id="node13" class="node">
<title>12</title>
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<!-- 12&#45;&gt;2 -->
<g id="edge11" class="edge">
<title>12&#45;&gt;2</title>
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<!-- 22 -->
<g id="node23" class="node">
<title>22</title>
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<text text-anchor="middle" x="866" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">create_index_salmon</text>
<!-- 12&#45;&gt;22 -->
<g id="edge36" class="edge">
<title>12&#45;&gt;22</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M744.1318,-647.8314C765.9321,-638.2018 792.8878,-626.295 815.9004,-616.1299"/>
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<!-- 30 -->
<g id="node31" class="node">
<title>30</title>
<path fill="none" stroke="#56d86b" stroke-width="2" d="M502.5,-612C502.5,-612 413.5,-612 413.5,-612 407.5,-612 401.5,-606 401.5,-600 401.5,-600 401.5,-588 401.5,-588 401.5,-582 407.5,-576 413.5,-576 413.5,-576 502.5,-576 502.5,-576 508.5,-576 514.5,-582 514.5,-588 514.5,-588 514.5,-600 514.5,-600 514.5,-606 508.5,-612 502.5,-612"/>
<text text-anchor="middle" x="458" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">pe_map_genome_star</text>
<!-- 12&#45;&gt;30 -->
<g id="edge49" class="edge">
<title>12&#45;&gt;30</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M655.9812,-650.7638C652.9452,-649.8181 649.9316,-648.8897 647,-648 606.5552,-635.7257 561.0059,-622.6883 524.7584,-612.4994"/>
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<!-- 33 -->
<g id="node34" class="node">
<title>33</title>
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<text text-anchor="middle" x="581" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">map_genome_star</text>
<!-- 12&#45;&gt;33 -->
<g id="edge53" class="edge">
<title>12&#45;&gt;33</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M672.2142,-647.8314C656.6097,-638.6221 637.476,-627.3301 620.7697,-617.4706"/>
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<!-- 34 -->
<g id="node35" class="node">
<title>34</title>
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<text text-anchor="middle" x="627" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">generate_alfa_index</text>
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<!-- 12&#45;&gt;34 -->
<g id="edge55" class="edge">
<title>12&#45;&gt;34</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M698.2459,-647.9843C685.3704,-599.1929 649.7572,-464.2377 634.3078,-405.6927"/>
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<!-- 13 -->
<g id="node14" class="node">
<title>13</title>
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<!-- 13&#45;&gt;3 -->
<g id="edge13" class="edge">
<title>13&#45;&gt;3</title>
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<!-- 13&#45;&gt;4 -->
<g id="edge15" class="edge">
<title>13&#45;&gt;4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M842.8888,-503.8314C865.0903,-494.2018 892.5422,-482.295 915.9784,-472.1299"/>
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<!-- 14 -->
<g id="node15" class="node">
<title>14</title>
<path fill="none" stroke="#56d8d8" stroke-width="2" d="M981.5,-540C981.5,-540 894.5,-540 894.5,-540 888.5,-540 882.5,-534 882.5,-528 882.5,-528 882.5,-516 882.5,-516 882.5,-510 888.5,-504 894.5,-504 894.5,-504 981.5,-504 981.5,-504 987.5,-504 993.5,-510 993.5,-516 993.5,-516 993.5,-528 993.5,-528 993.5,-534 987.5,-540 981.5,-540"/>
<text text-anchor="middle" x="938" y="-519.5" font-family="sans" font-size="10.00" fill="#000000">quantification_salmon</text>
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<!-- 14&#45;&gt;3 -->
<g id="edge14" class="edge">
<title>14&#45;&gt;3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M903.9338,-503.8314C886.3467,-494.4516 864.7084,-482.9112 845.9832,-472.9244"/>
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<!-- 14&#45;&gt;4 -->
<g id="edge16" class="edge">
<title>14&#45;&gt;4</title>
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<!-- 15 -->
<g id="node16" class="node">
<title>15</title>
<path fill="none" stroke="#d86656" stroke-width="2" d="M304,-828C304,-828 274,-828 274,-828 268,-828 262,-822 262,-816 262,-816 262,-804 262,-804 262,-798 268,-792 274,-792 274,-792 304,-792 304,-792 310,-792 316,-798 316,-804 316,-804 316,-816 316,-816 316,-822 310,-828 304,-828"/>
<text text-anchor="middle" x="289" y="-807.5" font-family="sans" font-size="10.00" fill="#000000">start</text>
<!-- 15&#45;&gt;5 -->
<g id="edge17" class="edge">
<title>15&#45;&gt;5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M261.8279,-808.0715C193.6945,-801.6146 21,-774.5428 21,-666 21,-666 21,-666 21,-522 21,-481.8412 23.3583,-435.4372 25.1179,-406.4031"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="28.6264,-406.3741 25.7568,-396.1753 21.6401,-405.9376 28.6264,-406.3741"/>
<!-- 23 -->
<g id="node24" class="node">
<title>23</title>
<path fill="none" stroke="#d88556" stroke-width="2" d="M352,-756C352,-756 226,-756 226,-756 220,-756 214,-750 214,-744 214,-744 214,-732 214,-732 214,-726 220,-720 226,-720 226,-720 352,-720 352,-720 358,-720 364,-726 364,-732 364,-732 364,-744 364,-744 364,-750 358,-756 352,-756"/>
<text text-anchor="middle" x="289" y="-735.5" font-family="sans" font-size="10.00" fill="#000000">pe_remove_adapters_cutadapt</text>
<!-- 15&#45;&gt;23 -->
<g id="edge37" class="edge">
<title>15&#45;&gt;23</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M289,-791.8314C289,-784.131 289,-774.9743 289,-766.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="292.5001,-766.4132 289,-756.4133 285.5001,-766.4133 292.5001,-766.4132"/>
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</g>
<!-- 25 -->
<g id="node26" class="node">
<title>25</title>
<path fill="none" stroke="#56d0d8" stroke-width="2" d="M633,-756C633,-756 523,-756 523,-756 517,-756 511,-750 511,-744 511,-744 511,-732 511,-732 511,-726 517,-720 523,-720 523,-720 633,-720 633,-720 639,-720 645,-726 645,-732 645,-732 645,-744 645,-744 645,-750 639,-756 633,-756"/>
<text text-anchor="middle" x="578" y="-735.5" font-family="sans" font-size="10.00" fill="#000000">remove_adapters_cutadapt</text>
</g>
<!-- 15&#45;&gt;25 -->
<g id="edge38" class="edge">
<title>15&#45;&gt;25</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M316.1884,-803.2264C358.0493,-792.7974 439.8362,-772.4214 500.9133,-757.205"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="502.0535,-760.528 510.9108,-754.7143 500.3613,-753.7356 502.0535,-760.528"/>
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</g>
<!-- 16 -->
<g id="node17" class="node">
<title>16</title>
<path fill="none" stroke="#56b1d8" stroke-width="2" d="M488,-684C488,-684 376,-684 376,-684 370,-684 364,-678 364,-672 364,-672 364,-660 364,-660 364,-654 370,-648 376,-648 376,-648 488,-648 488,-648 494,-648 500,-654 500,-660 500,-660 500,-672 500,-672 500,-678 494,-684 488,-684"/>
<text text-anchor="middle" x="432" y="-663.5" font-family="sans" font-size="10.00" fill="#000000">pe_remove_polya_cutadapt</text>
<!-- 16&#45;&gt;6 -->
<g id="edge18" class="edge">
<title>16&#45;&gt;6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M363.9254,-649.6621C320.3484,-639.2036 263.4646,-625.5515 216.9388,-614.3853"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="217.7171,-610.9728 207.1764,-612.0423 216.0835,-617.7795 217.7171,-610.9728"/>
</g>
<!-- 16&#45;&gt;13 -->
<g id="edge25" class="edge">
<title>16&#45;&gt;13</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M500.2455,-649.1041C555.3802,-635.3026 625.8995,-617.2498 639,-612 684.4521,-593.7857 733.1171,-565.4197 765.1109,-545.4097"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="767.0883,-548.3005 773.6762,-540.0028 763.3517,-542.3812 767.0883,-548.3005"/>
</g>
<!-- 16&#45;&gt;30 -->
<g id="edge50" class="edge">
<title>16&#45;&gt;30</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M438.5609,-647.8314C441.4027,-639.9617 444.7937,-630.5712 447.9419,-621.8533"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="451.2462,-623.0076 451.3508,-612.4133 444.6623,-620.63 451.2462,-623.0076"/>
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</g>
<!-- 17 -->
<g id="node18" class="node">
<title>17</title>
<path fill="none" stroke="#5663d8" stroke-width="2" d="M334,-684C334,-684 250,-684 250,-684 244,-684 238,-678 238,-672 238,-672 238,-660 238,-660 238,-654 244,-648 250,-648 250,-648 334,-648 334,-648 340,-648 346,-654 346,-660 346,-660 346,-672 346,-672 346,-678 340,-684 334,-684"/>
<text text-anchor="middle" x="292" y="-663.5" font-family="sans" font-size="10.00" fill="#000000">create_index_kallisto</text>
<!-- 17&#45;&gt;6 -->
<g id="edge19" class="edge">
<title>17&#45;&gt;6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M251.6252,-647.8314C230.3213,-638.2446 204.0017,-626.4008 181.4789,-616.2655"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="182.6399,-612.95 172.0844,-612.038 179.7674,-619.3334 182.6399,-612.95"/>
<!-- 17&#45;&gt;7 -->
<g id="edge21" class="edge">
<title>17&#45;&gt;7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M296.0375,-647.8314C297.7487,-640.131 299.7835,-630.9743 301.6852,-622.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="305.1554,-622.9344 303.9082,-612.4133 298.3221,-621.4159 305.1554,-622.9344"/>
</g>
<!-- 18 -->
<g id="node19" class="node">
<title>18</title>
<path fill="none" stroke="#c6d856" stroke-width="2" d="M626,-684C626,-684 530,-684 530,-684 524,-684 518,-678 518,-672 518,-672 518,-660 518,-660 518,-654 524,-648 530,-648 530,-648 626,-648 626,-648 632,-648 638,-654 638,-660 638,-660 638,-672 638,-672 638,-678 632,-684 626,-684"/>
<text text-anchor="middle" x="578" y="-663.5" font-family="sans" font-size="10.00" fill="#000000">remove_polya_cutadapt</text>
<!-- 18&#45;&gt;7 -->
<g id="edge20" class="edge">
<title>18&#45;&gt;7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M517.7428,-649.9314C478.7499,-639.5333 427.6092,-625.8958 385.5884,-614.6902"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="386.2332,-611.2399 375.669,-612.0451 384.4295,-618.0036 386.2332,-611.2399"/>
</g>
<!-- 18&#45;&gt;14 -->
<g id="edge27" class="edge">
<title>18&#45;&gt;14</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M638.3727,-649.2621C686.6525,-635.6647 748.0287,-617.8214 759,-612 781.3196,-600.1571 781.2394,-588.8412 803,-576 824.6856,-563.2031 849.9681,-552.1801 872.7521,-543.4917"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="874.2001,-546.6872 882.346,-539.9126 871.7533,-540.1287 874.2001,-546.6872"/>
</g>
<!-- 18&#45;&gt;33 -->
<g id="edge54" class="edge">
<title>18&#45;&gt;33</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M578.757,-647.8314C579.0779,-640.131 579.4594,-630.9743 579.816,-622.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="583.3133,-622.5503 580.2328,-612.4133 576.3194,-622.2589 583.3133,-622.5503"/>
</g>
<!-- 19 -->
<g id="node20" class="node">
<title>19</title>
<path fill="none" stroke="#a7d856" stroke-width="2" d="M287,-396C287,-396 211,-396 211,-396 205,-396 199,-390 199,-384 199,-384 199,-372 199,-372 199,-366 205,-360 211,-360 211,-360 287,-360 287,-360 293,-360 299,-366 299,-372 299,-372 299,-384 299,-384 299,-390 293,-396 287,-396"/>
<text text-anchor="middle" x="249" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">merge_TIN_scores</text>
</g>
<!-- 19&#45;&gt;8 -->
<g id="edge22" class="edge">
<title>19&#45;&gt;8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M245.0738,-359.7623C239.763,-335.0928 230.2406,-290.8598 224.022,-261.9731"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="227.4205,-261.129 221.8943,-252.0896 220.5773,-262.6023 227.4205,-261.129"/>
<!-- 20 -->
<g id="node21" class="node">
<title>20</title>
<path fill="none" stroke="#61d856" stroke-width="2" d="M430.5,-252C430.5,-252 349.5,-252 349.5,-252 343.5,-252 337.5,-246 337.5,-240 337.5,-240 337.5,-228 337.5,-228 337.5,-222 343.5,-216 349.5,-216 349.5,-216 430.5,-216 430.5,-216 436.5,-216 442.5,-222 442.5,-228 442.5,-228 442.5,-240 442.5,-240 442.5,-246 436.5,-252 430.5,-252"/>
<text text-anchor="middle" x="390" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc_all_samples</text>
<!-- 20&#45;&gt;9 -->
<g id="edge23" class="edge">
<title>20&#45;&gt;9</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M353.9151,-215.8314C335.2011,-206.4089 312.1568,-194.8062 292.26,-184.7883"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="293.5792,-181.5339 283.0734,-180.1628 290.4311,-187.7861 293.5792,-181.5339"/>
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</g>
<!-- 21 -->
<g id="node22" class="node">
<title>21</title>
<path fill="none" stroke="#5682d8" stroke-width="2" d="M545,-396C545,-396 439,-396 439,-396 433,-396 427,-390 427,-384 427,-384 427,-372 427,-372 427,-366 433,-360 439,-360 439,-360 545,-360 545,-360 551,-360 557,-366 557,-372 557,-372 557,-384 557,-384 557,-390 551,-396 545,-396"/>
<text text-anchor="middle" x="492" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">rename_star_rpm_for_alfa</text>
<!-- 21&#45;&gt;11 -->
<g id="edge24" class="edge">
<title>21&#45;&gt;11</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M521.2717,-359.8314C536.1088,-350.6221 554.3015,-339.3301 570.1862,-329.4706"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="572.087,-332.4102 578.7377,-324.1628 568.3955,-326.4628 572.087,-332.4102"/>
<!-- 27 -->
<g id="node28" class="node">
<title>27</title>
<path fill="none" stroke="#56d88a" stroke-width="2" d="M507,-324C507,-324 477,-324 477,-324 471,-324 465,-318 465,-312 465,-312 465,-300 465,-300 465,-294 471,-288 477,-288 477,-288 507,-288 507,-288 513,-288 519,-294 519,-300 519,-300 519,-312 519,-312 519,-318 513,-324 507,-324"/>
<text text-anchor="middle" x="492" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc</text>
</g>
<!-- 21&#45;&gt;27 -->
<g id="edge44" class="edge">
<title>21&#45;&gt;27</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M492,-359.8314C492,-352.131 492,-342.9743 492,-334.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="495.5001,-334.4132 492,-324.4133 488.5001,-334.4133 495.5001,-334.4132"/>
<!-- 22&#45;&gt;13 -->
<g id="edge26" class="edge">
<title>22&#45;&gt;13</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M849.5978,-575.8314C841.9585,-567.3694 832.7317,-557.1489 824.3793,-547.8971"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="826.9221,-545.4906 817.6231,-540.4133 821.7262,-550.1813 826.9221,-545.4906"/>
<!-- 22&#45;&gt;14 -->
<g id="edge28" class="edge">
<title>22&#45;&gt;14</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M884.1686,-575.8314C892.7152,-567.2848 903.0557,-556.9443 912.3802,-547.6198"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="914.9905,-549.9592 919.5867,-540.4133 910.0408,-545.0095 914.9905,-549.9592"/>
<!-- 23&#45;&gt;16 -->
<g id="edge29" class="edge">
<title>23&#45;&gt;16</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M325.0849,-719.8314C343.7989,-710.4089 366.8432,-698.8062 386.74,-688.7883"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="388.5689,-691.7861 395.9266,-684.1628 385.4208,-685.5339 388.5689,-691.7861"/>
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</g>
<!-- 24 -->
<g id="node25" class="node">
<title>24</title>
<path fill="none" stroke="#d8ac56" stroke-width="2" d="M480.5,-756C480.5,-756 393.5,-756 393.5,-756 387.5,-756 381.5,-750 381.5,-744 381.5,-744 381.5,-732 381.5,-732 381.5,-726 387.5,-720 393.5,-720 393.5,-720 480.5,-720 480.5,-720 486.5,-720 492.5,-726 492.5,-732 492.5,-732 492.5,-744 492.5,-744 492.5,-750 486.5,-756 480.5,-756"/>
<text text-anchor="middle" x="437" y="-735.5" font-family="sans" font-size="10.00" fill="#000000">extract_transcriptome</text>
<!-- 24&#45;&gt;17 -->
<g id="edge30" class="edge">
<title>24&#45;&gt;17</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M400.4104,-719.8314C381.2761,-710.3302 357.6771,-698.6121 337.3878,-688.5374"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="338.8397,-685.3506 328.3265,-684.038 335.7265,-691.6203 338.8397,-685.3506"/>
<!-- 29 -->
<g id="node30" class="node">
<title>29</title>
<path fill="none" stroke="#5692d8" stroke-width="2" d="M951.5,-684C951.5,-684 780.5,-684 780.5,-684 774.5,-684 768.5,-678 768.5,-672 768.5,-672 768.5,-660 768.5,-660 768.5,-654 774.5,-648 780.5,-648 780.5,-648 951.5,-648 951.5,-648 957.5,-648 963.5,-654 963.5,-660 963.5,-660 963.5,-672 963.5,-672 963.5,-678 957.5,-684 951.5,-684"/>
<text text-anchor="middle" x="866" y="-663.5" font-family="sans" font-size="10.00" fill="#000000">concatenate_transcriptome_and_genome</text>
<!-- 24&#45;&gt;29 -->
<g id="edge48" class="edge">
<title>24&#45;&gt;29</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M492.5523,-722.1009C495.7388,-721.3498 498.9044,-720.6425 502,-720 611.8423,-697.2001 643.3016,-701.3158 758.4306,-684.0501"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="758.9824,-687.5065 768.3422,-682.5422 757.9295,-680.5861 758.9824,-687.5065"/>
<!-- 25&#45;&gt;18 -->
<g id="edge31" class="edge">
<title>25&#45;&gt;18</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M578,-719.8314C578,-712.131 578,-702.9743 578,-694.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="581.5001,-694.4132 578,-684.4133 574.5001,-694.4133 581.5001,-694.4132"/>
<!-- 26 -->
<g id="node27" class="node">
<title>26</title>
<path fill="none" stroke="#d87556" stroke-width="2" d="M306,-468C306,-468 218,-468 218,-468 212,-468 206,-462 206,-456 206,-456 206,-444 206,-444 206,-438 212,-432 218,-432 218,-432 306,-432 306,-432 312,-432 318,-438 318,-444 318,-444 318,-456 318,-456 318,-462 312,-468 306,-468"/>
<text text-anchor="middle" x="262" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">calculate_TIN_scores</text>
<!-- 26&#45;&gt;19 -->
<g id="edge32" class="edge">
<title>26&#45;&gt;19</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M258.7196,-431.8314C257.3292,-424.131 255.6759,-414.9743 254.1308,-406.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="257.5458,-405.6322 252.3246,-396.4133 250.6572,-406.8761 257.5458,-405.6322"/>
</g>
<!-- 27&#45;&gt;20 -->
<g id="edge33" class="edge">
<title>27&#45;&gt;20</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M466.2611,-287.8314C453.4563,-278.7927 437.8091,-267.7476 424.0281,-258.0198"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="425.9188,-255.0703 415.7307,-252.1628 421.882,-260.7891 425.9188,-255.0703"/>
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</g>
<!-- 28 -->
<g id="node29" class="node">
<title>28</title>
<path fill="none" stroke="#56d85b" stroke-width="2" d="M557.5,-468C557.5,-468 526.5,-468 526.5,-468 520.5,-468 514.5,-462 514.5,-456 514.5,-456 514.5,-444 514.5,-444 514.5,-438 520.5,-432 526.5,-432 526.5,-432 557.5,-432 557.5,-432 563.5,-432 569.5,-438 569.5,-444 569.5,-444 569.5,-456 569.5,-456 569.5,-462 563.5,-468 557.5,-468"/>
<text text-anchor="middle" x="542" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">star_rpm</text>
<!-- 28&#45;&gt;21 -->
<g id="edge34" class="edge">
<title>28&#45;&gt;21</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M529.3829,-431.8314C523.6828,-423.6232 516.8337,-413.7606 510.5641,-404.7323"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="513.3658,-402.6306 504.787,-396.4133 507.6162,-406.6234 513.3658,-402.6306"/>
<!-- 29&#45;&gt;22 -->
<g id="edge35" class="edge">
<title>29&#45;&gt;22</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M866,-647.8314C866,-640.131 866,-630.9743 866,-622.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="869.5001,-622.4132 866,-612.4133 862.5001,-622.4133 869.5001,-622.4132"/>
<!-- 30&#45;&gt;26 -->
<g id="edge41" class="edge">
<title>30&#45;&gt;26</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M401.2061,-578.1309C398.0991,-577.3816 395.0154,-576.6655 392,-576 345.3375,-565.701 210.8316,-576.5085 180,-540 169.6767,-527.7759 172.4105,-518.0854 180,-504 186.7016,-491.5626 197.6591,-481.5183 209.4142,-473.6213"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="211.4179,-476.497 218.0653,-468.247 207.724,-470.551 211.4179,-476.497"/>
<!-- 30&#45;&gt;28 -->
<g id="edge46" class="edge">
<title>30&#45;&gt;28</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M497.676,-575.994C512.2533,-567.278 527.3061,-555.3294 536,-540 546.5756,-521.3529 547.5564,-496.9131 546.1798,-478.2079"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="549.6583,-477.8167 545.1853,-468.2124 542.6927,-478.5098 549.6583,-477.8167"/>
<!-- 31 -->
<g id="node32" class="node">
<title>31</title>
<path fill="none" stroke="#d8a456" stroke-width="2" d="M515,-540C515,-540 365,-540 365,-540 359,-540 353,-534 353,-528 353,-528 353,-516 353,-516 353,-510 359,-504 365,-504 365,-504 515,-504 515,-504 521,-504 527,-510 527,-516 527,-516 527,-528 527,-528 527,-534 521,-540 515,-540"/>
<text text-anchor="middle" x="440" y="-519.5" font-family="sans" font-size="10.00" fill="#000000">index_genomic_alignment_samtools</text>
<!-- 30&#45;&gt;31 -->
<g id="edge52" class="edge">
<title>30&#45;&gt;31</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M453.4578,-575.8314C451.5116,-568.0463 449.1932,-558.7729 447.0337,-550.1347"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="450.4242,-549.2658 444.6033,-540.4133 443.6332,-550.9636 450.4242,-549.2658"/>
</g>
<!-- 31&#45;&gt;26 -->
<g id="edge42" class="edge">
<title>31&#45;&gt;26</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M395.0831,-503.8314C371.065,-494.1162 341.3166,-482.0831 316.0408,-471.8592"/>
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<title>32</title>
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<title>32&#45;&gt;26</title>
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<title>33&#45;&gt;26</title>
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<title>33&#45;&gt;28</title>
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<title>34&#45;&gt;27</title>
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